Return to Top

A

Abaqus CAE 6.7-1

module load abaqus/6.7-1

URL: http://www.simulia.com/products/abaqus_cae.html

Tags: 


proc ModulesHelp { } {
  puts stderr "Abaqus CAE 6.7-1"
  puts stderr "TAGS: finite element analysis, computer aided engineering"
  puts stderr "URL: http://www.simulia.com/products/abaqus_cae.html"
}

module-whatis "Abaqus CAE 6.7-1"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/Abaqus/Commands

Abaqus CAE 6.9-2

module load abaqus/6.9-2

URL: http://www.simulia.com/products/abaqus_cae.html

Tags: 


proc ModulesHelp { } {
  puts stderr "Abaqus CAE 6.9-2"
  puts stderr "TAGS: finite element analysis, computer aided engineering"
  puts stderr "URL: http://www.simulia.com/products/abaqus_cae.html"
}

module-whatis "Abaqus CAE 6.9-2"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/Abaqus-6.9.2/Commands

abinit-6.10.3

module load abinit/6.10.3 


proc ModulesHelp { } {
  puts stderr "abinit-6.10.3"
}
module-whatis "abinit-6.10.3"

source $env(MODULEPATH)/.gui_warning

module load mvapich2/1.5-intel
prereq mvapich2/1.5-intel

prepend-path PATH /packages/abinit/6.10.3/bin

abinit-6.12.1

module load abinit/6.12.1 


proc ModulesHelp { } {
  puts stderr "abinit-6.12.1"
}
module-whatis "abinit-6.12.1"

source $env(MODULEPATH)/.gui_warning

module load mvapich2/1.5-intel
prereq mvapich2/1.5-intel

prepend-path PATH /packages/abinit/6.12.1/bin

ABYSS 1.3.0

module load abyss/1.3.0

URL: http://www.bcgsc.ca/platform/bioinfo/software/abyss

Tags: 


proc ModulesHelp { } {
  puts stderr "ABYSS compiled with openmpi/1.4.3-gnu"
  puts stderr "TAGS: bioinformatics"
  puts stderr "URL: http://www.bcgsc.ca/platform/bioinfo/software/abyss"
}

module-whatis "ABYSS 1.3.0 "

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/abyss-1.3.0/bin

ABYSS compiled with openmpi/1.4.3-gnu

module load abyss/1.2.7

URL: http://www.bcgsc.ca/platform/bioinfo/software/abyss

Tags: 


proc ModulesHelp { } {
  puts stderr "ABYSS compiled with openmpi/1.4.3-gnu"
  puts stderr "TAGS: bioinformatics"
  puts stderr "URL: http://www.bcgsc.ca/platform/bioinfo/software/abyss"
}

module-whatis "ABYSS compiled with openmpi/1.4.3-gnu"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/abyss-1.2.7/bin
prepend-path PATH /packages/abyss-1.2.7/ABYSS

AERMOD v. 11103

module load aermod/11103

URL: http://www.epa.gov/ttn/scram/dispersion_prefrec.htm

Tags: 


proc ModulesHelp { } {
  puts stderr "AERMOD v. 11103"
  puts stderr "TAGS: atmospheric modeling"
  puts stderr "URL: http://www.epa.gov/ttn/scram/dispersion_prefrec.htm"
}

module-whatis "AERMOD v. 11103"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/aermod/bin

Alias of GCC 4.4.4

module load gcc/4.4.0

Tags: 


proc ModulesHelp { } {
  puts stderr "Alias of GCC 4.4.4" 
  puts stderr "TAGS: compilers"
}
module-whatis "Alias of GCC 4.4.4"

prepend-path PATH /packages/gcc-4.4.4/bin

Allinea DDT Version 2.2.1

module load ddt/2.2.1

Tags: 


proc ModulesHelp { } {
  puts stderr "Allinea DDT Version 2.2.1"
  puts stderr "TAGS: debuggers"
}
module-whatis "Allinea DDT Version 2.2.1"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH      /packages/allinea/ddt/bin
setenv      DDTCONFIG /packages/allinea/ddt/templates/config.ddt

AllPaths-LG 36681

module load allpathslg/36681 


proc ModulesHelp { } {
  puts stderr "AllPaths-LG 36681"
}
module-whatis "AllPaths-LG 36681"
module load boost/1.43.0
prereq boost/1.43.0

prepend-path PATH /packages/allpathslg-36681/bin

AmberTools 1.2 with Amber10 with gcc icc ifort mpif90 intel-mvapich-1.0.1

module load amber/10

URL: http://ambermd.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "AmberTools 1.2 with Amber10 with gcc icc ifort mpif90 intel-mvapich-1.0.1"
  puts stderr "TAGS: molecular dynamics"
  puts stderr "URL: http://ambermd.org/"
}

module-whatis "AmberTools 1.2 with Amber10 with gcc icc ifort mpif90 intel-mvapich-1.0.1"

source $env(MODULEPATH)/.gui_warning

module load mvapich/1.0.1-intel
prereq mvapich/1.0.1-intel

setenv      AMBERHOME /packages/amber10
setenv      MPI_HOME  /packages/intel-mvapich-1.0.1
prepend-path PATH      /packages/amber10/bin

AMD Open64 SDK 4.2.4 (Not for Production use)

module load amd_open64/4.2.4 


proc ModulesHelp { } {
  puts stderr "AMD Open64 SDK 4.2.4 (Not for Production use)"
}

module-whatis "AMD Open64 SDK 4.2.4 (Not for Production use)"

source $env(MODULEPATH)/.gui_warning

prepend-path AMDSDK_ROOT     /packages/amd_open64/v1.0
prepend-path DOCROOT         /packages/amd_open64/v1.0/pdf
prepend-path PATH            /packages/amd_open64/v1.0/x86_open64-4.2.4/bin
prepend-path OPEN64_TC       /packages/amd_open64/v1.0/x86_open64-4.2.4/bin
prepend-path ACML            /packages/amd_open64/v1.0/acml
prepend-path AMD_LIBM        /packages/amd_open64/v1.0/amdlibm-2-1-lin64
prepend-path LD_LIBRARY_PATH /packages/amd_open64/v1.0/acml/open64_64/lib
prepend-path LD_LIBRARY_PATH /packages/amd_open64/v1.0/acml/open64_64_mp/lib
prepend-path LD_LIBRARY_PATH /packages/amd_open64/v1.0/amdlibm-2-1-lin64/lib/dynamic

Ansoft HFSS 12.0.1

module load hfss/12.0.1

Tags: 


proc ModulesHelp { } {
  puts stderr "Ansoft HFSS 12.0.1"
  puts stderr "TAGS: finite element analysis"
}
module-whatis "Ansoft HFSS 12.0.1"
prepend-path PATH /packages/hfss/ansoft/hfss12

Ansoft HFSS 12.1

module load hfss/12.1

Tags: 


proc ModulesHelp { } {
  puts stderr "Ansoft HFSS 12.1"
  puts stderr "TAGS: finite element analysis"
}
module-whatis "Ansoft HFSS 12.1"
prepend-path PATH /packages/hfss12.1/ansoft/hfss12

Ansys 12.1 Fluent

module load ansysfluent/12.1

URL: http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT

Tags: 


proc ModulesHelp { } {
  puts stderr "Ansys 12.1 Fluent"
  puts stderr "TAGS: fluid dynamics"
  puts stderr "URL: http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT"
}

module-whatis "Ansys 12.1 Fluent"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH                  /packages/ansys_inc/v121/fluent/bin
setenv      ANSYSLI_SERVERS       "2325@fluentflex"
setenv      FLUENTLM_LICENSE_FILE "1055@fluentflex"
prepend-path LD_LIBRARY_PATH /usr/lib64

Ansys 12.1 Workbench runwb2

module load ansysworkbench/12.1

URL: http://www.ansys.com/Products/Workflow+Technology/ANSYS+Workbench+Platform

Tags: 


proc ModulesHelp { } {
  puts stderr "Ansys 12.1 Workbench runwb2"
  puts stderr "TAGS: fluid dynamics"
  puts stderr "URL: http://www.ansys.com/Products/Workflow+Technology/ANSYS+Workbench+Platform"
}

module-whatis "Ansys 12.1 Workbench runwb2"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH                  /packages/ansys_inc/v121/Framework/bin/Linux64
prepend-path LD_LIBRARY_PATH       /packages/ansys_inc/v121/Framework/bin/Linux64:/packages/ansys_inc/v121/Framework/bin/Linux64/Mesa:/usr/lib64
setenv      ANSYSLI_SERVERS       "2325@fluentflex"
setenv      FLUENTLM_LICENSE_FILE "1055@fluentflex"

Ansys 12.1.4 Fluent

module load ansysfluent/12.1.4

URL: http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT

Tags: 


proc ModulesHelp { } {
  puts stderr "Ansys 12.1.4 Fluent"
  puts stderr "TAGS: fluid dynamics"
  puts stderr "URL: http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT"
}

module-whatis "Ansys 12.1.4 Fluent"

source $env(MODULEPATH)/.gui_warning

exec /packages/ansys_inc-12.1.4/utils/fix_license.sh

prepend-path PATH                  /packages/ansys_inc-12.1.4/v121/fluent/bin
prepend-path LD_LIBRARY_PATH       /packages/ansys_inc-12.1.4/v121/Framework/bin/Linux64:/packages/ansys_inc-12.1.4/v121/Framework/bin/Linux64/Mesa:/usr/lib64

Ansys 12.1.4 Workbench runwb2

module load ansysworkbench/12.1.4

URL: http://www.ansys.com/Products/Workflow+Technology/ANSYS+Workbench+Platform

Tags: 


proc ModulesHelp { } {
  puts stderr "Ansys 12.14 Workbench runwb2"
  puts stderr "TAGS: fluid dynamics"
  puts stderr "URL: http://www.ansys.com/Products/Workflow+Technology/ANSYS+Workbench+Platform"
}

module-whatis "Ansys 12.1.4 Workbench runwb2"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH                  /packages/ansys_inc-12.1.4/v121/Framework/bin/Linux64
prepend-path LD_LIBRARY_PATH       /packages/ansys_inc-12.1.4/v121/Framework/bin/Linux64:/packages/ansys_inc-12.1.4/v121/Framework/bin/Linux64/Mesa:/usr/lib64

Ansys 13 Fluent

module load ansysfluent/13

URL: http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT

Tags: 


proc ModulesHelp { } {
  puts stderr "Ansys 13 Fluent"
  puts stderr "TAGS: fluid dynamics"
  puts stderr "URL: http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT"
}

module-whatis "Ansys 13 Fluent"

source $env(MODULEPATH)/.gui_warning

exec /packages/ansys_inc-13/utils/fix_license.sh

prepend-path PATH                  /packages/ansys_inc-13/v130/fluent/bin
prepend-path LD_LIBRARY_PATH       /packages/ansys_inc-13/v130/Framework/bin/Linux64:/packages/ansys_inc-13/v130/Framework/bin/Linux64/Mesa:/usr/lib64

Ansys 13 Workbench runwb2

module load ansysworkbench/13

URL: http://www.ansys.com/Products/Workflow+Technology/ANSYS+Workbench+Platform

Tags: 


proc ModulesHelp { } {
  puts stderr "Ansys 13 Workbench runwb2"
  puts stderr "TAGS: fluid dynamics"
  puts stderr "URL: http://www.ansys.com/Products/Workflow+Technology/ANSYS+Workbench+Platform"
}

module-whatis "Ansys 13 Workbench runwb2"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH                  /packages/ansys_inc-13/v130/Framework/bin/Linux64
prepend-path LD_LIBRARY_PATH       /packages/ansys_inc-13/v130/Framework/bin/Linux64:/packages/ansys_inc-13/v130/Framework/bin/Linux64/Mesa:/usr/lib64

Ant 1.8.1

module load ant/1.8.1

URL: http://ant.apache.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "Ant 1.8.1"
  puts stderr "TAGS: build tools, java"
  puts stderr "URL: http://ant.apache.org/"
}

module-whatis "Ant 1.8.1"

source $env(MODULEPATH)/.gui_warning

setenv      JAVA_HOME /packages/java/latest
setenv      ANT_HOME  /packages/ant/apapche-ant-1.8.1
prepend-path PATH      /packages/ant/apache-ant-1.8.1/bin

Ant 1.8.2

module load ant/1.8.2

URL: http://ant.apache.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "Ant 1.8.2"
  puts stderr "TAGS: build tools, java"
  puts stderr "URL: http://ant.apache.org/"
}

module-whatis "Ant 1.8.2"

source $env(MODULEPATH)/.gui_warning

setenv      JAVA_HOME /packages/java/latest
setenv      ANT_HOME  /packages/ant/apache-ant-1.8.2
prepend-path PATH      /packages/ant/apache-ant-1.8.2/bin

ARPACK / PARPACK compiled with mvapich/1.1-intel

module load arpack/96

URL: http://www.caam.rice.edu/software/ARPACK/

Tags: 


proc ModulesHelp { } {
  puts stderr "ARPACK / PARPACK compiled with mvapich/1.1-intel"
  puts stderr "TAGS: numerical libraries"
  puts stderr "URL: http://www.caam.rice.edu/software/ARPACK/"
}

module-whatis "ARPACK / PARPACK compiled with mvapich/1.1-intel"

source $env(MODULEPATH)/.gui_warning

prepend-path LD_LIBRARY_PATH /packages/ARPACK/lib

atlas-3.8.3

module load atlas/3.8.3

Tags: 


proc ModulesHelp { } {
  puts stderr "atlas-3.8.3"
  puts stderr "TAGS: numerical libraries"
}

module-whatis "atlas-3.8.3"

prepend-path LD_LIBRARY_PATH /packages/ATLAS-3.8.3

atompaw-3.0.1.3

module load atompaw/3.0.1.3 


proc ModulesHelp { } {
  puts stderr "atompaw-3.0.1.3"
}
module-whatis "atompaw-3.0.1.3"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/atompaw/3.0.1.3/bin
prepend-path LD_LIBRARY_PATH /packages/atompaw/3.0.1.3/lib

Autodesk Maya 2008

module load maya/2008

Tags: 


proc ModulesHelp { } {
  puts stderr "Autodesk Maya 2008"
  puts stderr "TAGS: visualization"
}
module-whatis "Autodesk Maya 2008"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/maya2008/maya2008-x64/bin
prepend-path SGIAWD_LICENSE_FILE /packages/maya2008/aw.dat
Return to Top

B

bambino 1.02

module load bambino/1.02 


proc ModulesHelp { } {
  puts stderr "bambino 1.02"
}
module-whatis "bambino 1.02"

source $env(MODULEPATH)/.gui_warning

module load java

append-path CLASSPATH /packages/bambino-1.02/bambino_core.jar
append-path CLASSPATH /packages/bambino-1.02/sam.jar
append-path CLASSPATH /packages/bambino-1.02/mysql.jar

beagle-1.0: A general purpose library for evaluating the likelihood of sequence evolution on trees

module load beagle/1.0 


proc ModulesHelp { } {
  puts stderr "beagle-1.0"
}

module-whatis "beagle-1.0: A general purpose library for evaluating the likelihood of sequence evolution on trees"

source $env(MODULEPATH)/.gui_warning

module load java/1.6.0_30
prereq java/1.6.0_30

prepend-path LD_LIBRARY_PATH /packages/beagle/beagle-1.0/lib
prepend-path INCLUDE /packages/beagle/beagle-1.0/include

beast-1.6.2: A java based program for Bayesian MCMC analysis of molecular sequences.

module load beast/1.6.2 


proc ModulesHelp { } {
  puts stderr "beast-1.6.2"
}

module-whatis "beast-1.6.2: A java based program for Bayesian MCMC analysis of molecular sequences."

source $env(MODULEPATH)/.gui_warning

module load java/1.6.0_30
prereq java/1.6.0_30

module load beagle/1.0
prereq beagle/1.0

prepend-path LD_LIBRARY_PATH /packages/beast/BEASTv1.6.2/lib
prepend-path PATH /packages/beast/BEASTv1.6.2/bin

BEDTools-2.12.0

module load bedtools/2.12.0

URL: http://code.google.com/p/bedtools/downloads/list

Tags: 


proc ModulesHelp { } {
  puts stderr "BEDTools-2.12.0"
  puts stderr "TAGS: genomics"
  puts stderr "URL: http://code.google.com/p/bedtools/downloads/list"
}

module-whatis "BEDTools-2.12.0"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/BEDTools-Version-2.12.0/bin

BEDTools-2.9.0

module load bedtools/2.9.0

URL: http://code.google.com/p/bedtools/

Tags: 


proc ModulesHelp { } {
  puts stderr "BEDTools-2.9.0"
  puts stderr "TAGS: genomics"
  puts stderr "URL: http://code.google.com/p/bedtools/"
}

module-whatis "BEDTools-2.9.0"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/BEDTools-2.9.0/bin

berkeley_upc-2.6.0

module load berkeley_upc/2.6.0

URL: http://upc.lbl.gov/

Tags: 


proc ModulesHelp { } {
  puts stderr "berkeley_upc-2.6.0"
  puts stderr "TAGS: compilers"
  puts stderr "URL: http://upc.lbl.gov/"
}

module-whatis "berkeley_upc-2.6.0"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH    /packages/berkeley_upc-2.6.0/bin
prepend-path MANPATH /packages/berkeley_upc-2.6.0/man

bfast-0.5.2

module load bfast/0.5.2

URL: http://bfast.sourceforge.net/

Tags: 


proc ModulesHelp { } {
  puts stderr "bfast-0.5.2"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://bfast.sourceforge.net/"
}

module-whatis "bfast-0.5.2"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH    /packages/bfast-0.5.2/bin
prepend-path MANPATH /packages/bfast-0.5.2/man

bfast-0.6.0d

module load bfast/0.6.0d

URL: http://bfast.sourceforge.net/

Tags: 


proc ModulesHelp { } {
  puts stderr "bfast-0.6.0d"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://bfast.sourceforge.net/"
}

module-whatis "bfast-0.6.0d"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bfast-0.6.0d/bin

bfast-0.6.1a

module load bfast/0.6.1a

URL: http://bfast.sourceforge.net/

Tags: 


proc ModulesHelp { } {
  puts stderr "bfast-0.6.1a"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://bfast.sourceforge.net/"
}

module-whatis "bfast-0.6.1a"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bfast-0.6.1a/bin

bfast-0.6.4a

module load bfast/0.6.4a

URL: http://bfast.sourceforge.net/

Tags: 


proc ModulesHelp { } {
  puts stderr "bfast-0.6.4a"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://bfast.sourceforge.net/"
}

module-whatis "bfast-0.6.4a"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bfast-0.6.4a/bin

bfast-0.6.4b

module load bfast/0.6.4b

URL: http://bfast.sourceforge.net/

Tags: 


proc ModulesHelp { } {
  puts stderr "bfast-0.6.4b"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://bfast.sourceforge.net/"
}

module-whatis "bfast-0.6.4b"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bfast-0.6.4b/bin

bfast-0.6.4d

module load bfast/0.6.4d

URL: http://bfast.sourceforge.net/

Tags: 


proc ModulesHelp { } {
  puts stderr "bfast-0.6.4d"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://bfast.sourceforge.net/"
}

module-whatis "bfast-0.6.4d"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bfast-0.6.4d/bin

bfast-0.6.4e

module load bfast/0.6.4e

URL: http://bfast.sourceforge.net/

Tags: 


proc ModulesHelp { } {
  puts stderr "bfast-0.6.4e"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://bfast.sourceforge.net/"
}

module-whatis "bfast-0.6.4e"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bfast-0.6.4e/bin

bfast-0.7.0a

module load bfast/0.7.0a

URL: http://bfast.sourceforge.net/

Tags: 


proc ModulesHelp { } {
  puts stderr "bfast-0.7.0a"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://bfast.sourceforge.net/"
}

module-whatis "bfast-0.7.0a"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bfast-0.7.0a/bin

bfast-bwa-0.6.4e

module load bfast/0.6.4e-bwa

URL: http://bfast.sourceforge.net/

Tags: 


proc ModulesHelp { } {
  puts stderr "bfast-0.6.4e with bwa"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://bfast.sourceforge.net/"
}

module-whatis "bfast-bwa-0.6.4e"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bfast+bwa-0.6.4e/bin

BioPerl-1.6.1

module load bioperl/1.6.1

URL: http://www.bioperl.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "BioPerl-1.6.1"
  puts stderr "TAGS: bioinformatics, genomics"
  puts stderr "URL: http://www.bioperl.org/"
}

module-whatis "BioPerl-1.6.1"

source $env(MODULEPATH)/.gui_warning

prepend-path PERL5LIB /packages/BioPerl-1.6.1/lib/perl5
prepend-path PATH     /packages/BioPerl-1.6.1/bin

BioPython 1.53

module load biopython/1.53

URL: http://biopython.org/wiki/Biopython

Tags: 


proc ModulesHelp { } {
  puts stderr "BioPython 1.53"
  puts stderr "TAGS: bioinformatics, genomics"
  puts stderr "URL: http://biopython.org/wiki/Biopython"
}

module-whatis "BioPython 1.53"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH       /packages/biopython-1.53/lib64/python2.4/site-packages/Bio
prepend-path PYTHONPATH /packages/biopython-1.53/lib64/python2.4/site-packages

bioscope-1.2

module load bioscope/1.2

URL: https://products.appliedbiosystems.com/ab/en/US/adirect/ab?cmd=catNavigate2&catID=606802

Tags: 


proc ModulesHelp { } {
  puts stderr "bioscope-1.2"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: https://products.appliedbiosystems.com/ab/en/US/adirect/ab?cmd=catNavigate2&catID=606802"
}

module-whatis "bioscope-1.2"

source $env(MODULEPATH)/.gui_warning

prepend-path BIOSCOPEROOT /packages/bioscope-1.2/bioscope
prepend-path PERL5LIB     /packages/bioscope-1.2/bioscope/lib/perl
prepend-path PATH         /packages/bioscope-1.2/bioscope/bin
setenv      JAVA_HOME    /packages/java/latest
prepend-path PATH         /packages/java/latest/bin

blat-34

module load blat/34

Tags: 


proc ModulesHelp { } {
  puts stderr "blat-34"
  puts stderr "TAGS: sequencing"
}

module-whatis "blat-34"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/blat-34

boost-1.43.0

module load boost/1.43.0 


proc ModulesHelp { } {
  puts stderr "boost-1.43.0"
}

module-whatis "boost-1.43.0"

source $env(MODULEPATH)/.gui_warning

prepend-path CFLAGS          "-I/packages/boost-1.43.0/include"
prepend-path LDFLAGS         "-L/packages/boost-1.43.0/lib"
prepend-path LD_LIBRARY_PATH /packages/boost-1.43.0/lib

bowtie-0.12.5

module load bowtie/0.12.5 


proc ModulesHelp { } {
  puts stderr "bowtie-0.12.5"
}

module-whatis "bowtie-0.12.5"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bowtie-0.12.5

bowtie-0.12.7

module load bowtie/0.12.7 


proc ModulesHelp { } {
  puts stderr "bowtie-0.12.7"
}

module-whatis "bowtie-0.12.7"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bowtie-0.12.7

bowtie2-2.0.0-beta5

module load bowtie2/2.0.0-beta5 


proc ModulesHelp { } {
  puts stderr "bowtie2-2.0.0-beta5"
}

module-whatis "bowtie2-2.0.0-beta5"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bowtie2/bowtie2-2.0.0-beta5
prepend-path PATH /packages/bowtie2/bowtie2-2.0.0-beta5/scripts

BreakDancer-1.1_2011_02_21 : Provides genome-wide detection of structural variants from next generation paired-end sequencing reads.

module load breakdancer/1.1_2011_02_21

Tags: 


proc ModulesHelp { } {
  puts stderr "BreakDancer-1.1_2011_02_21 : Provides genome-wide detection of structural variants from next generation paired-end sequencing reads."
  puts stderr "TAGS: sequencing"
}

module-whatis "BreakDancer-1.1_2011_02_21 : Provides genome-wide detection of structural variants from next generation paired-end sequencing reads."

source $env(MODULEPATH)/.gui_warning

module load breakdancer_samtools/0.1.6
prereq breakdancer_samtools/0.1.6

prepend-path PATH	/packages/breakdancer/breakdancer-1.1_2011_02_21/bin
prepend-path PERL5LIB	/packages/breakdancer/breakdancer-1.1_2011_02_21/lib/perl5

breakdancer_samtools-0.1.6

module load breakdancer_samtools/0.1.6 


proc ModulesHelp { } {
  puts stderr "breakdancer_samtools-0.1.6"
}
module-whatis "breakdancer_samtools-0.1.6"

source $env(MODULEPATH)/.gui_warning

prepend-path INCLUDE /packages/samtools/breakdancer_samtools-0.1.6
prepend-path LD_LIBRARY_PATH /packages/samtools/breakdancer_samtools-0.1.6
prepend-path PATH /packages/samtools/breakdancer_samtools-0.1.6
prepend-path PATH /packages/samtools/breakdancer_samtools-0.1.6/misc

breakway-0.7.1 Identify Structural Variations in Genomic Data

module load breakway/0.7.1 


proc ModulesHelp { } {
  puts stderr "breakway-0.7.1 Identify Structural Variations in Genomic Data"
}
module-whatis "breakway-0.7.1 Identify Structural Variations in Genomic Data"

source $env(MODULEPATH)/.gui_warning

module load samtools/0.1.14
prereq samtools/0.1.14

module load dnaa/0.1.2
prereq dnaa/0.1.2

prepend-path PATH /packages/breakway-0.7.1
prepend-path PATH /packages/breakway-0.7.1/scripts

bwa-0.4.6

module load bwa/0.4.6 


proc ModulesHelp { } {
  puts stderr "bwa-0.4.6"
}

module-whatis "bwa-0.4.6"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bwa-0.4.6

bwa-0.4.9

module load bwa/0.4.9 


proc ModulesHelp { } {
  puts stderr "bwa-0.4.9"
}

module-whatis "bwa-0.4.9"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bwa-0.4.9

bwa-0.5.7

module load bwa/0.5.7 


proc ModulesHelp { } {
  puts stderr "bwa-0.5.7"
}

module-whatis "bwa-0.5.7"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bwa-0.5.7

bwa-0.5.9

module load bwa/0.5.9 


proc ModulesHelp { } {
  puts stderr "bwa-0.5.9"
}

module-whatis "bwa-0.5.9"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bwa-0.5.9/bin
prepend-path PATH /packages/bwa-0.5.9

bwa-0.6.1

module load bwa/0.6.1 


proc ModulesHelp { } {
  puts stderr "bwa-0.6.1"
}

module-whatis "bwa-0.6.1"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/bwa-0.6.1/bin
prepend-path PATH /packages/bwa-0.6.1
Return to Top

C

Cadence 5 IC5141

module load cadence5/IC5141 


proc ModulesHelp { } {
  puts stderr "Cadence 5 IC5141"
}
module-whatis "Cadence 5 IC5141"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/Cadence5/IC5141/bin
prepend-path CDS_LIC_FILE "5280@enlicense0.eas.asu.edu"
prepend-path CDSHOME /packages/Cadence5/IC5141
prepend-path CDS_INST_DIR /packages/Cadence5
prepend-path IC /packages/Cadence5/IC5141
prepend-path CDS /packages/Cadence5
prepend-path CDS_ROOT /packages/Cadence5/IC5141
prepend-path CDS_ROOT /packages/Cadence5/IC5141
prepend-path LM_LICENSE_FILE "27000@enlicense0.eas.asu.edu"

Cadence 5 IUS

module load cadence5/IUS 


proc ModulesHelp { } {
  puts stderr "Cadence 5 IUS"
}
module-whatis "Cadence 5 IUS"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/Cadence5/IUS/bin
prepend-path LM_LICENSE_FILE "27000@enlicense0.eas.asu.edu"

Cadence 5 LCU

module load cadence5/LCU 


proc ModulesHelp { } {
  puts stderr "Cadence 5 LCU"
}
module-whatis "Cadence 5 LCU"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/Cadence5/LCU/bin
prepend-path LM_LICENSE_FILE "27000@enlicense0.eas.asu.edu"

Cadence 5 MMSIM

module load cadence5/MMSIM 


proc ModulesHelp { } {
  puts stderr "Cadence 5 MMSIM"
}
module-whatis "Cadence 5 MMSIM"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/Cadence5/MMSIM/bin
prepend-path MMSIM_ROOT /packages/Cadence5/MMSIM
prepend-path LM_LICENSE_FILE "27000@enlicense0.eas.asu.edu"

Cadence 6 IC6140614504

module load cadence6/IC6140614504 


proc ModulesHelp { } {
  puts stderr "Cadence 6 IC6140614504"
}
module-whatis "Cadence 6 IC6140614504"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/Cadence6/IC6140614504/tools/bin:/packages/Cadence6/IC6140614504/tools/dfII/bin:/packages/Cadence6/IC6140614504/tools/dracula/bin:/packages/Cadence6/MMSIM0720263/tools/bin:/packages/Cadence6/MMSIM0720263/tools/dfII/bin:/packages/Cadence6/IUS0820025/tools/bin:/packages/Cadence6/IUS0820025/tools/dfII/bin
prepend-path LD_LIBRARY_PATH /packages/Cadence6/IC6140614504/tools/lib
prepend-path CDS_LIC_FILE "5280@enlicense6.eas.asu.edu"
prepend-path base_dir /packages/Cadence6
prepend-path base_dir /packages/Cadence6
prepend-path CDSHOME /packages/Cadence6/IC6140614504
prepend-path CDS_INST_DIR /packages/Cadence6
prepend-path MMSIM /packages/Cadence6
prepend-path IUS /packages/Cadence6/IUS0820025
prepend-path IC /packages/Cadence6/IC6140614504
prepend-path CDS /packages/Cadence6
prepend-path CDS_ROOT /packages/Cadence6/IC6140614504
prepend-path CDS_Netlisting_Mode Analog
prepend-path LM_LICENSE_FILE "5280@enlicense6.eas.asu.edu"

Cadence 6 IUS0820025

module load cadence6/IUS0820025 


proc ModulesHelp { } {
  puts stderr "Cadence 6 IUS0820025"
}
module-whatis "Cadence 6 IUS0820025"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/Cadence6/IUS0820025/bin
prepend-path LM_LICENSE_FILE "5280@enlicense6.eas.asu.edu"

Cadence 6 MMSIM0720263

module load cadence6/MMSIM0720263 


dule1.0
proc ModulesHelp { } {
  puts stderr "Cadence 6 MMSIM0720263"
}
module-whatis "Cadence 6 MMSIM0720263"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/Cadence6/MMSIM0720263/bin
prepend-path MMSIM_ROOT /packages/Cadence6/MMSIM0720263
prepend-path LM_LICENSE_FILE "5280@enlicense6.eas.asu.edu"

Cadence 6 NCSU

module load cadence6/NCSU 


proc ModulesHelp { } {
  puts stderr "Cadence 6 NCSU"
}
module-whatis "Cadence 6 NCSU"

source $env(MODULEPATH)/.gui_warning

prepend-path CDK_DIR /packages/Cadence6/NCSU/ncsu-cdk-1.6.0.beta
prepend-path PATH /packages/Cadence6/NCSU/ncsu-cdk-1.6.0.beta/bin
prepend-path LM_LICENSE_FILE "5280@enlicense6.eas.asu.edu"

cap3

module load cap/3

Tags: 


proc ModulesHelp { } {
  puts stderr "cap3"
  puts stderr "TAGS: bioinformatics, "
}
module-whatis "cap3"
prepend-path PATH /packages/cap3

CASAVA_v1.8.0

module load casava/1.8.0

Tags: 


proc ModulesHelp { } {
  puts stderr "CASAVA_v1.8.0"
  puts stderr "TAGS: genomics"
}

module-whatis "CASAVA_v1.8.0"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/CASAVA_v1.8.0/bin

CASAVA_v1.8.2

module load casava/1.8.2

Tags: 


proc ModulesHelp { } {
  puts stderr "CASAVA_v1.8.2"
  puts stderr "TAGS: genomics"
}

module-whatis "CASAVA_v1.8.2"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/CASAVA_v1.8.2/bin

cdbfasta cdbyank 0.99

module load cdbfasta/0.99 


proc ModulesHelp { } {
  puts stderr "cdbfasta cdbyank 0.99"
}

module-whatis "cdbfasta cdbyank 0.99"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/cdbfasta

cgatools-1.0.0.13

module load cgatools/1.0.0.13 


proc ModulesHelp { } {
  puts stderr "cgatools-1.0.0.13"
}

module-whatis "cgatools-1.0.0.13"

source $env(MODULEPATH)/.gui_warning

module load boost/1.43.0

prepend-path PATH            /packages/cgatools-1.0.0.13/bin
prepend-path LD_LIBRARY_PATH /packages/cgatools-1.0.0.13/lib

cgatools-1.0.0.15

module load cgatools/1.0.0.15 


proc ModulesHelp { } {
  puts stderr "cgatools-1.0.0.15"
}

module-whatis "cgatools-1.0.0.15"

source $env(MODULEPATH)/.gui_warning

module load boost/1.43.0

prepend-path PATH            /packages/cgatools-1.0.0.15/bin
prepend-path LD_LIBRARY_PATH /packages/cgatools-1.0.0.15/lib

cgatools-1.1.1.5

module load cgatools/1.1.1.5 


proc ModulesHelp { } {
  puts stderr "cgatools-1.1.1.5"
}

module-whatis "cgatools-1.1.1.5"

source $env(MODULEPATH)/.gui_warning

module load boost/1.43.0

prepend-path PATH            /packages/cgatools-1.1.1.5/bin
prepend-path LD_LIBRARY_PATH /packages/cgatools-1.1.1.5/lib
prepend-path PATH            /packages/doxygen-1.7.2/bin

cgatools-1.3.0.9

module load cgatools/1.3.0.9 


proc ModulesHelp { } {
  puts stderr "cgatools-1.3.0.9"
}

module-whatis "cgatools-1.3.0.9"

source $env(MODULEPATH)/.gui_warning

module load boost/1.43.0

prepend-path PATH            /packages/cgatools-1.3.0.9/bin
prepend-path LD_LIBRARY_PATH /packages/cgatools-1.3.0.9/lib
prepend-path PATH            /packages/doxygen-1.7.2/bin

circos-0.52

module load circos/0.52 


proc ModulesHelp { } {
  puts stderr "circos-0.52"
}

module-whatis "circos-0.52"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/circos-0.52/bin

clustalw-2.0.9

module load clustalw/2.0.9 


proc ModulesHelp { } {
  puts stderr "clustalw-2.0.9"
}

module-whatis "clustalw-2.0.9"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/clustalw-2.0.9

cmake-2.8.3

module load cmake/2.8.3 


proc ModulesHelp { } {
  puts stderr "cmake-2.8.3"
}

module-whatis "cmake-2.8.3"

prepend-path PATH    /packages/cmake-2.8.3/bin
prepend-path MANPATH /packages/cmake-2.8.3/man
prepend-path INCLUDE /packages/cmake-2.8.3/share/cmake-2.8/include

CNAseg 1.0

module load cnaseg/1.0 


proc ModulesHelp { } {
  puts stderr "CNAseg 1.0"
}

module-whatis "CNAseg 1.0"

source $env(MODULEPATH)/.gui_warning

module load r/2.11.1
prereq r/2.11.1

prepend-path PATH /packages/CNAseg

cnssolve multi-proc 1.21

module load cnssolve/1.21-mp 


proc ModulesHelp { } {
  puts stderr "cnssolve multi-proc 1.21"
}

module-whatis "cnssolve multi-proc 1.21"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/cnssolve-mp-1.21/bin:/packages/cnssolve-mp-1.21

cnssolve single proc 1.21

module load cnssolve/1.21-sp 


proc ModulesHelp { } {
  puts stderr "cnssolve single proc 1.21"
}

module-whatis "cnssolve single proc 1.21"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/cnssolve-sp-1.21/bin:/packages/cnssolve-sp-1.21

CNV-seq-0.2-7

module load cnv-seq/0.2-7

Tags: 


proc ModulesHelp { } {
  puts stderr "CNV-seq-0.2-7"
  puts stderr "TAGS: bioinformatics, phylogenetics"
}
module-whatis "CNV-seq-0.2-7"

module load r/2.11.1
prereq r/2.11.1

prepend-path PATH /packages/R-2.11.1/cnv-seq

Cobalt V4

module load cobalt/4 


proc ModulesHelp { } {
  puts stderr "Cobalt V4"
}

module-whatis "Cobalt V4"

source $env(MODULEPATH)/.gui_warning

module load mvapich/1.0.1-intel
prereq mvapich/1.0.1-intel

prepend-path PATH                 /packages/cobalt/bin
prepend-path PATH                 /packages/cobalt/utilities
setenv      COBALT_LIC           "1737@10.0.0.40"
setenv      CBLTLOC              /packages/cobalt
setenv      COBALT_UTILITIES_LIC "10.0.0.40:/opt/Cobalt/license/utilities.lic"
setenv      COBALT               /packages/cobalt

Comsol 3.5a

module load comsol/3.5a 


proc ModulesHelp { } {
  puts stderr "Comsol 3.5a"
}

module-whatis "Comsol 3.5a"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/comsol35/program/COMSOL35a/bin

Comsol 4.0

module load comsol/4.0 


proc ModulesHelp { } {
  puts stderr "Comsol 4.0"
}

module-whatis "Comsol 4.0"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/comsol/program/bin

Comsol 4.1

module load comsol/4.1 


proc ModulesHelp { } {
  puts stderr "Comsol 4.1"
}

module-whatis "Comsol 4.1"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/comsol41/program/COMSOL41/bin

corona_lite-0.32

module load corona_lite/0.32 


proc ModulesHelp { } {
  puts stderr "corona_lite-0.32"
}
module-whatis "corona_lite-0.32"

source $env(MODULEPATH)/.gui_warning

setenv      CORONAROOT /packages/AB/corona_lite-0.32
prepend-path PATH       /packages/AB/corona_lite-0.32/bin:/packages/AB/corona_lite-0.32/scripts_tgen
prepend-path PYTHONPATH /packages/AB/corona_lite-0.32/lib/python
prepend-path PERL5LIB   /packages/AB/corona_lite-0.32/lib/perl

corona_lite-4.0

module load corona_lite/4.0 


proc ModulesHelp { } {
  puts stderr "corona_lite-4.0"
}
module-whatis "corona_lite-4.0"

source $env(MODULEPATH)/.gui_warning

setenv      CORONAROOT /packages/AB/corona_lite-4.0
prepend-path PATH       /packages/AB/corona_lite-4.0/bin:/packages/AB/corona_lite-4.0/scripts_tgen
prepend-path PYTHONPATH /packages/AB/corona_lite-4.0/lib/python
prepend-path PERL5LIB   /packages/AB/corona_lite-4.0/lib/perl

CP2K 2.3.43

module load cp2k/2.3.43

URL: http://cp2k.berlios.de/

Tags: 


proc ModulesHelp { } {
  puts stderr "CP2K 2.3.43"
  puts stderr "TAGS: chemistry"
  puts stderr "url: http://cp2k.berlios.de/"
}
module-whatis "CP2K 2.3.43"
source $env(MODULEPATH)/.gui_warning


module load openmpi/1.4.3-intel 
prereq openmpi/1.4.3-intel
prepend-path PATH /packages/cp2k/exe/Linux-x86-64-intel

CPLEX 12.3

module load cplex/12.3 


proc ModulesHelp { } {
  puts stderr "CPLEX 12.3"
}

module-whatis "CPLEX 12.3"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH  /packages/cplex/12.3/cplex/bin/x86-64_sles10_4.1/
prepend-path ILOG_LICENSE_FILE /packages/cplex/12.3/licenses/access.ilm

CUDA Toolkit 2.3

module load cuda/2.3 


proc ModulesHelp { } {
  puts stderr "CUDA Toolkit 2.3"
}

module-whatis "CUDA Toolkit 2.3"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/cuda/bin
prepend-path LD_LIBRARY_PATH /packages/cuda/lib64

CUDA Toolkit 3.2.16

module load cuda/3.2.16 


proc ModulesHelp { } {
  puts stderr "CUDA Toolkit 3.2.16
}

module-whatis "CUDA Toolkit 3.2.16"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/cudatoolkit-3.2.16/cuda/bin
prepend-path LD_LIBRARY_PATH /packages/cudatoolkit-3.2.16/cuda/lib64:/packages/cudatoolkit-3.2.16/cuda/lib

cufflinks-0.8.3

module load cufflinks/0.8.3

URL: http://cufflinks.cbcb.umd.edu/

Tags: 


proc ModulesHelp { } {
  puts stderr "cufflinks-0.8.3"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}

module-whatis "cufflinks-0.8.3"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/cufflinks-0.8.3

cufflinks-0.9.0

module load cufflinks/0.9.0

URL: http://cufflinks.cbcb.umd.edu/

Tags: 


proc ModulesHelp { } {
  puts stderr "cufflinks-0.9.0"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}

module-whatis "cufflinks-0.9.0"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/cufflinks-0.9.0

cufflinks-0.9.1

module load cufflinks/0.9.1

URL: http://cufflinks.cbcb.umd.edu/

Tags: 


proc ModulesHelp { } {
  puts stderr "cufflinks-0.9.1"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}

module-whatis "cufflinks-0.9.1"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/cufflinks-0.9.1

cufflinks-0.9.2

module load cufflinks/0.9.2

URL: http://cufflinks.cbcb.umd.edu/

Tags: 


proc ModulesHelp { } {
  puts stderr "cufflinks-0.9.2"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}

module-whatis "cufflinks-0.9.2"

source $env(MODULEPATH)/.gui_warning

module load boost/1.43.0

prepend-path PATH /packages/cufflinks-0.9.2/bin

cufflinks-0.9.3

module load cufflinks/0.9.3

URL: http://cufflinks.cbcb.umd.edu/

Tags: 


proc ModulesHelp { } {
  puts stderr "cufflinks-0.9.3"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}

module-whatis "cufflinks-0.9.3"

source $env(MODULEPATH)/.gui_warning

module load boost/1.43.0

prepend-path PATH /packages/cufflinks-0.9.3/bin

cufflinks-1.0.1

module load cufflinks/1.0.1

URL: http://cufflinks.cbcb.umd.edu/

Tags: 


proc ModulesHelp { } {
  puts stderr "cufflinks-1.0.1"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}

module-whatis "cufflinks-1.0.1"

source $env(MODULEPATH)/.gui_warning

module load boost/1.43.0

module load samtools/0.1.14

prepend-path PATH /packages/cufflinks/cufflinks-1.0.1/bin

cufflinks-1.0.2

module load cufflinks/1.0.2

URL: http://cufflinks.cbcb.umd.edu/

Tags: 


proc ModulesHelp { } {
  puts stderr "cufflinks-1.0.2"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}

module-whatis "cufflinks-1.0.2"

source $env(MODULEPATH)/.gui_warning

module load boost/1.43.0

module load samtools/0.1.14

prepend-path PATH /packages/cufflinks/cufflinks-1.0.2/bin

cufflinks-1.0.3

module load cufflinks/1.0.3

URL: http://cufflinks.cbcb.umd.edu/

Tags: 


proc ModulesHelp { } {
  puts stderr "cufflinks-1.0.3"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}

module-whatis "cufflinks-1.0.3"

source $env(MODULEPATH)/.gui_warning

module load boost/1.43.0

module load samtools/0.1.14

prepend-path PATH /packages/cufflinks/cufflinks-1.0.3/bin

cufflinks-1.3.0

module load cufflinks/1.3.0

URL: http://cufflinks.cbcb.umd.edu/

Tags: 


proc ModulesHelp { } {
  puts stderr "cufflinks-1.3.0"
  puts stderr "TAGS: sequencing"
  puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}

module-whatis "cufflinks-1.3.0"

source $env(MODULEPATH)/.gui_warning

module load boost/1.43.0

module load samtools/0.1.14

prepend-path PATH /packages/cufflinks-1.3.0
Return to Top

D

dindel-1.01

module load dindel/1.01

Tags: 


proc ModulesHelp { } {
  puts stderr "dindel-1.01"
  puts stderr "TAGS: genomics"
}

module-whatis "dindel-1.01"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH                 /packages/dindel-1.01:/packages/dindel-1.01/utils

dnaa-0.1.2 : DNAA is an analysis package for short-read next generation sequencing.

module load dnaa/0.1.2

Tags: 


proc ModulesHelp { } {
  puts stderr "dnaa-0.1.2 : DNAA is an analysis package for short-read next generation sequencing."
  puts stderr "TAGS: sequencing"
}

module-whatis "dnaa-0.1.2 : DNAA is an analysis package for short-read next generation sequencing."

source $env(MODULEPATH)/.gui_warning

prepend-path PATH    /packages/dnaa/dnaa-0.1.2/bin

dowser

module load dowser/2003

URL: http://mtzweb.stanford.edu/programs/documentation/dowser/Dowser.htm


proc ModulesHelp { } {
  puts stderr "dowser"
  puts stderr "URL: http://mtzweb.stanford.edu/programs/documentation/dowser/Dowser.htm"
}
module-whatis "dowser"

source $env(MODULEPATH)/.gui_warning

prepend-path DOWSER   /packages/dowser
prepend-path DOW_MACH /packages/dowser/linux
prepend-path PATH     /packages/dowser/bin:/packages/dowser/linux

doxygen-1.7.2

module load doxygen/1.7.2 


proc ModulesHelp { } {
  puts stderr "doxygen-1.7.2"
}
module-whatis "doxygen-1.7.2"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH    /packages/doxygen-1.7.2/bin
prepend-path MANPATH /packages/doxygen-1.7.2/man
Return to Top

E

ea-utils-1.0.5-171 (http://code.google.com/p/ea-utils/)

module load ea-utils/1.0.5-171

Tags: 


proc ModulesHelp { } {
  puts stderr "ea-utils-1.0.5-171"
  puts stderr "TAGS: sequencing output"
}
module-whatis "ea-utils-1.0.5-171 (http://code.google.com/p/ea-utils/)"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/ea-utils/ea-utils-1.0.5-171/bin

ensembl-api 63

module load ensembl-api/63 


proc ModulesHelp { } {
  puts stderr "ensembl-api 63"
}

module-whatis "ensembl-api 63"

source $env(MODULEPATH)/.gui_warning

module load bioperl/1.6.1
prereq bioperl/1.6.1

append-path PERL5LIB /packages/ensembl-api/63/ensembl/modules
append-path PERL5LIB /packages/ensembl-api/63/ensembl-compara/modules
append-path PERL5LIB /packages/ensembl-api/63/ensembl-variation/modules
append-path PERL5LIB /packages/ensembl-api/63/ensembl-functgenomics/modules

euler-sr.1.1.2 parallel

module load euler-sr/1.1.2 


proc ModulesHelp { } {
  puts stderr "euler-sr.1.1.2 parallel"
}
module-whatis "euler-sr.1.1.2 parallel"

prepend-path PATH /packages/euler-sr.1.1.2/assembly_utils:/packages/euler-sr.1.1.2/assembly/x86_64
Return to Top

F

fastDNAml-1.2.2

module load fastdnaml/1.2.2 


proc ModulesHelp { } {
  puts stderr "fastDNAml-1.2.2"
}
module-whatis "fastDNAml-1.2.2"

prepend-path PATH /packages/fastDNAml-1.2.2/bin

FastQC 0.9.1 : Java based quality control application for high throughput sequence data

module load fastqc/0.9.1

Tags: 


proc ModulesHelp { } {
  puts stderr "FastQC 0.9.1 : Java based quality control application for high throughput sequence data"
  puts stderr "TAGS: sequencing"
}

module-whatis "FastQC 0.9.1 : Java based quality control application for high throughput sequence data"

source $env(MODULEPATH)/.gui_warning

module load java
prereq java

prepend-path PATH /packages/fastqc/fastqc_v0.9.1/FastQC

fastx_toolkit-0.0.13

module load fastx_toolkit/0.0.13 


proc ModulesHelp { } {
  puts stderr "fastx_toolkit-0.0.13"
}
module-whatis "fastx_toolkit-0.0.13"

prepend-path PATH /packages/fastx_toolkit-0.0.13/bin

fbat-202c

module load fbat/2.0.2c 


proc ModulesHelp { } {
module-whatis "fbat-202c"
  puts stderr "fbat-202c"
}

prepend-path PATH /packages/fbat-202c

FFTW Version 2.1.5 w/gcc, openmpi-1.2.7, fortran

module load fftw/2.1.5-openmpi

Tags: 


proc ModulesHelp { } {
  puts stderr "FFTW Version 2.1.5 w/gcc, openmpi-1.2.7, fortran"
  puts stderr "TAGS: numerical libraries"
}

module-whatis "FFTW Version 2.1.5 w/gcc, openmpi-1.2.7, fortran"

module load openmpi/1.2.7-gnu
prereq openmpi/1.2.7-gnu

prepend-path INCLUDE /packages/fftw-2.1.5/include
prepend-path LD_LIBRARY_PATH /packages/fftw-2.1.5/lib

FFTW Version 3.2.2 w/gcc, openmpi-1.4.2, fortran

module load fftw/3.2.2-openmpi

Tags: 


proc ModulesHelp { } {
  puts stderr "FFTW Version 3.2.2 w/gcc, openmpi-1.4.2, fortran"
  puts stderr "TAGS: numerical libraries"
}

module-whatis "FFTW Version 3.2.2 w/gcc, openmpi-1.4.2, fortran"

module load openmpi/1.4.2-gnu
prereq openmpi/1.4.2-gnu

prepend-path INCLUDE /packages/fftw-3.2.2/include
prepend-path LD_LIBRARY_PATH /packages/fftw-3.2.2/lib64
prepend-path PATH /packages/fftw-3.2.2/bin

FMRIB Software Library v4.1.6

module load fsl/4.1.6 


proc ModulesHelp { } {
  puts stderr "FMRIB Software Library v4.1.6"
}
module-whatis "FMRIB Software Library v4.1.6"

prepend-path PATH             /packages/fsl-4.1.6/bin
prepend-path LD_LIBRARY_PATH  /packages/fsl-4.1.6/lib
setenv       FSLDIR           /packages/fsl-4.1.6
setenv       FSLOUTPUTTYPE    "NIFTI_GZ"
setenv       FSLMULTIFILEQUIT "TRUE"
setenv       FSLTCLSH         /packages/fsl-4.1.6/bin/fsltclsh
setenv       FSLWISH          /packages/fsl-4.1.6/bin/fslwish
setenv       FSLLOCKDIR       ""
setenv       FSLMACHINELIST   ""
setenv       FSLREMOTECALL    ""
setenv       FSLCONFDIR       /packages/fsl-4.1.6/config
setenv       FSLMACHTYPE      "linux_64-gcc4.1"

FreeSurver v5.0.0 Stable

module load freesurfer/5.0.0 


proc ModulesHelp { } {
  puts stderr "FreeSurver v5.0.0 Stable"
}
module-whatis "FreeSurver v5.0.0 Stable"

setenv      FIX_VERTEX_AREA   ""
prepend-path FMRI_ANALYSIS_DIR /packages/freesurfer-5.0.0/fsfast
prepend-path FREESURFER_HOME   /packages/freesurfer-5.0.0
prepend-path FSFAST_HOME       /packages/freesurfer-5.0.0/fsfast
setenv      FSF_OUTPUT_FORMAT "nii"
setenv      FS_OVERRIDE       "0"
prepend-path LOCAL_DIR         /packages/freesurfer-5.0.0/local
prepend-path MINC_BIN_DIR      /packages/freesurfer-5.0.0/mni/bin
prepend-path MINC_LIB_DIR      /packages/freesurfer-5.0.0/mni/lib
prepend-path MNI_DATAPATH      /packages/freesurfer-5.0.0/mni/data
prepend-path MNI_DIR           /packages/freesurfer-5.0.0/mni
prepend-path MNI_PERL5LIB      /packages/freesurfer-5.0.0/mni/lib/perl5/5.8.5
setenv      OS                "Linux"
prepend-path PATH              /packages/freesurfer-5.0.0/bin:/packages/freesurfer-5.0.0/fsfast/bin:/packages/freesurfer-5.0.0/mni/bin
prepend-path PERL5LIB          /packages/freesurfer-5.0.0/mni/lib/perl5/5.8.5
prepend-path SUBJECTS_DIR      /packages/freesurfer-5.0.0/subjects

fusionmap 1.42.1

module load fusionmap/1.42.1 


proc ModulesHelp { } {
  puts stderr "fusionmap 1.42.1"
}
module-whatis "fusionmap 1.42.1"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH    /packages/FusionMap/bin
Return to Top

G

gatk 1.0.5974

module load gatk/1.0.5974

Tags: 


proc ModulesHelp { } {
  puts stderr "gatk 1.0.5974"
  puts stderr "TAGS: java"
  puts stderr "http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit"
}

module-whatis "gatk 1.0.5974"

source $env(MODULEPATH)/.gui_warning

module load java
module load ant
module load python/2.7.2

setenv      JAVA_HOME /packages/java/latest
setenv      ANT_HOME  /packages/ant/apache-ant-1.8.2

prepend-path CLASSPATH /packages/gatk/GenomeAnalysisTK-1.0.5974

prepend-path PATH /packages/gatk/GenomeAnalysisTK-1.0.5974/perl
prepend-path PATH /packages/gatk/GenomeAnalysisTK-1.0.5974/python

gatk 1.3-24-gc8b1c92

module load gatk/1.3-24-gc8b1c92

Tags: 


proc ModulesHelp { } {
  puts stderr "gatk 1.3-24-gc8b1c92"
  puts stderr "TAGS: java"
  puts stderr "http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit"
}

module-whatis "gatk 1.3-24-gc8b1c92"

source $env(MODULEPATH)/.gui_warning

module load java
module load ant
module load python/2.7.2

setenv      JAVA_HOME /packages/java/latest
setenv      ANT_HOME  /packages/ant/apache-ant-1.8.2

prepend-path CLASSPATH /packages/gatk/GenomeAnalysisTK-1.3-24-gc8b1c92

prepend-path PATH /packages/gatk/GenomeAnalysisTK-1.3-24-gc8b1c92/perl
prepend-path PATH /packages/gatk/GenomeAnalysisTK-1.3-24-gc8b1c92/python

Gaussian 03a.01

module load gaussian/03e.01

Tags: 


proc ModulesHelp { } {
  puts stderr "Gaussian 03a.01"
  puts stderr "TAGS: quantum, solid state"
}
module-whatis "Gaussian 03a.01"

module load pgi/7.0
prereq pgi/7.0

prepend-path PATH                 /packages/gaussian-03e.01/g03/bsd:/packages/gaussian-03e.01/g03/private:/packages/gaussian-03e.01/g03
prepend-path LD_LIBRARY_PATH      /packages/gaussian-03e.01/g03/bsd:/packages/gaussian-03e.01/g03/private:/packages/gaussian-03e.01/g03
setenv       F_ERROPT1            "271,271,2,1,2,2,2,2"
setenv       G03BASIS             /packages/gaussian-03e.01/g03/basis
setenv       g03root              /packages/gaussian-03e.01
setenv       GAUSS_ARCHDIR        /packages/gaussian-03e.01/g03/arch
setenv       GAUSS_EXEDIR         /packages/gaussian-03e.01/g03/bsd:/packages/gaussian-03e.01/g03/private:/packages/gaussian-03e.01/g03
setenv       GAUSS_LEXEDIR        /packages/gaussian-03e.01/g03/linda-exe
setenv       GMAIN                /packages/gaussian-03e.01/g03/bsd:/packages/gaussian-03e.01/g03/private:/packages/gaussian-03e.01/g03
setenv       gr                   /packages/gaussian-03e.01
setenv       KMP_DUPLICATE_LIB_OK "TRUE"
setenv       MP_STACK_OVERFLOW    "OFF"
setenv       TRAP_FPE             "OVERFL=ABORT;DIVZERO=ABORT;INT_OVERFL=ABORT"

if { [info exists env(PBS_O_WORKDIR) ] } {
  setenv GAUSS_SCRDIR $env(PBS_O_WORKDIR)
} else {
  setenv GAUSS_SCRDIR ""
}

Gaussian g09

module load gaussian/g09

Tags: 


proc ModulesHelp { } {
  puts stderr "Gaussian g09"
  puts stderr "TAGS: quantum, solid state"
}
module-whatis "Gaussian g09"

module load pgi/7.0
prereq pgi/7.0

prepend-path PATH                 /packages/gaussian/g09/bsd:/packages/gaussian/g09/private:/packages/gaussian/g09
prepend-path LD_LIBRARY_PATH      /packages/gaussian/g09/bsd:/packages/gaussian/g09/private:/packages/gaussian/g09
setenv       F_ERROPT1            "271,271,2,1,2,2,2,2"
setenv       G09BASIS             /packages/gaussian/g09/basis
setenv       g09root              /packages/gaussian/g09
setenv       GAUSS_ARCHDIR        /packages/gaussian/g09/arch
setenv       GAUSS_EXEDIR         /packages/gaussian/g09/bsd:/packages/gaussian/g09/private:/packages/gaussian/g09
setenv       GAUSS_LEXEDIR        /packages/gaussian/g09/linda-exe
setenv       GMAIN                /packages/gaussian/g09/bsd:/packages/gaussian/g09/private:/packages/gaussian/g09
setenv       gr                   /packages/gaussian/g09
setenv       KMP_DUPLICATE_LIB_OK "TRUE"
setenv       MP_STACK_OVERFLOW    "OFF"
setenv       TRAP_FPE             "OVERFL=ABORT;DIVZERO=ABORT;INT_OVERFL=ABORT"

if { [info exists env(PBS_O_WORKDIR) ] } {
  setenv GAUSS_SCRDIR $env(PBS_O_WORKDIR)
} else {
  setenv GAUSS_SCRDIR ""
}

GCC 3.4.6 including g77 (Unsupported - for legacy builds only)

module load gcc/3.4.6

Tags: 


proc ModulesHelp { } {
  puts stderr "GCC 3.4.6 including g77 (Unsupported - for legacy builds only)"
  puts stderr "TAGS: compilers"
}
module-whatis "GCC 3.4.6 including g77 (Unsupported - for legacy builds only)"

prepend-path PATH            /packages/gcc-3.4.6/bin
prepend-path LD_LIBRARY_PATH /packages/gcc-3.4.6/lib:/packages/gcc-3.4.6/lib64
prepend-path MANPATH         /packages/gcc-3.4.6/man

GCC 4.4.4 including gfortran

module load gcc/4.4.4

Tags: 


proc ModulesHelp { } {
  puts stderr "GCC 4.4.4 including gfortran"
  puts stderr "TAGS: compilers"
}
module-whatis "GCC 4.4.4 including gfortran"

prepend-path PATH /packages/gcc-4.4.4/bin

GCC 4.6.2 including gfortran

module load gcc/4.6.2

Tags: 


proc ModulesHelp { } {
  puts stderr "GCC 4.6.2 including gfortran"
  puts stderr "TAGS: compilers"
}
module-whatis "GCC 4.6.2 including gfortran"

prepend-path PATH /packages/gcc/gcc-4.6.2/bin
prepend-path LD_LIBRARY_PATH /packages/gcc/gcc-4.6.2/lib
prepend-path LD_LIBRARY_PATH /packages/gcc/gcc-4.6.2/lib64

GCC 4.6.3 including gfortran

module load gcc/4.6.3

Tags: 


proc ModulesHelp { } {
  puts stderr "GCC 4.6.3 including gfortran"
  puts stderr "TAGS: compilers"
}
module-whatis "GCC 4.6.3 including gfortran"

prepend-path PATH /packages/gcc/gcc-4.6.3/bin
prepend-path LD_LIBRARY_PATH /packages/gcc/gcc-4.6.3/lib
prepend-path LD_LIBRARY_PATH /packages/gcc/gcc-4.6.3/lib64

git-1.7.2.3

module load git/1.7.2.3

Tags: 


proc ModulesHelp { } {
  puts stderr "git-1.7.2.3"
  puts stderr "TAGS: version control"
}
module-whatis "git-1.7.2.3"
prepend-path PATH    /packages/git/bin
prepend-path MANPATH /packages/git/share/man

glimmer-3.02

module load glimmer/3.02 


proc ModulesHelp { } {
  puts stderr "glimmer-3.02"
}
module-whatis "glimmer-3.02"
prepend-path PATH /packages/glimmer3.02/bin:/packages/glimmer3.02/scripts

GMP - GNU Multiple Precision Arithmetic Library - 4.3.2 (Compiled with GCC 4.4.x)

module load gmp/4.3.2

Tags: 


proc ModulesHelp { } {
  puts stderr "GMP - GNU Multiple Precision Arithmetic Library - 4.3.2 (Compiled with GCC 4.4.x)"
  puts stderr "TAGS: numerical libraries"
}

module-whatis "GMP - GNU Multiple Precision Arithmetic Library - 4.3.2 (Compiled with GCC 4.4.x)"

source $env(MODULEPATH)/.gui_warning

module load gcc/4.4.0
prereq gcc/4.4.0

prepend-path INCLUDE /packages/gmp/gmp-4.3.2/include
prepend-path LD_LIBRARY_PATH /packages/gmp/gmp-4.3.2/lib

GMP - GNU Multiple Precision Arithmetic Library - 5.0.1 (Compiled with GCC 4.4.x)

module load gmp/5.0.1

Tags: 


proc ModulesHelp { } {
  puts stderr "GMP - GNU Multiple Precision Arithmetic Library - 5.0.1 (Compiled with GCC 4.4.x)"
  puts stderr "TAGS: numerical libraries"
}

module-whatis "GMP - GNU Multiple Precision Arithmetic Library - 5.0.1 (Compiled with GCC 4.4.x)"

source $env(MODULEPATH)/.gui_warning

module load gcc/4.4.0
prereq gcc/4.4.0

prepend-path INCLUDE /packages/gmp/gmp-5.0.1/include
prepend-path LD_LIBRARY_PATH /packages/gmp/gmp-5.0.1/lib

GNU Scientific Library version 1.12

module load gsl/1.12

Tags: 


proc ModulesHelp { } {
  puts stderr "GNU Scientific Library version 1.12"
  puts stderr "TAGS: scientific libraries, numerical libraries"
}
module-whatis "GNU Scientific Library version 1.12"
prepend-path PATH /packages/gsl/bin
prepend-path LD_LIBRARY_PATH /packages/gsl/lib
prepend-path LIBDIR /packages/gsl/lib

gnuplot-4.2.6

module load gnuplot/4.2.6 


proc ModulesHelp { } {
  puts stderr "gnuplot-4.2.6"
}
module-whatis "gnuplot-4.2.6"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH    /packages/gnuplot-4.2.6/bin
prepend-path MANPATH /packages/gnuplot-4.2.6/share/man

GotoBLAS version 1.26

module load gotoblas/1.26

URL: http://www.tacc.utexas.edu/tacc-projects/gotoblas2

Tags: 


proc ModulesHelp { } {
  puts stderr "GotoBLAS version 1.26 from TACC"
  puts stderr "URL: http://www.tacc.utexas.edu/tacc-projects/gotoblas2"
  puts stderr "TAGS: numerical libraries"
}

module-whatis "GotoBLAS version 1.26"

setenv      GOTO_LIB        /packages/GotoBLAS-1.26
prepend-path LD_LIBRARY_PATH /packages/GotoBLAS-1.26
setenv      GOTO_NUM_THEADS "1"

Grace 5.1.22

module load grace/5.1.22

URL: http://plasma-gate.weizmann.ac.il/Grace/


proc ModulesHelp { } {
  puts stderr "Grace 5.1.22"
  puts strerr "URL: http://plasma-gate.weizmann.ac.il/Grace/"
}

module-whatis "Grace 5.1.22"

prepend-path PATH            /packages/grace/bin
prepend-path LD_LIBRARY_PATH /packages/grace/lib

grads-1.94b

module load grads/1.94b 


proc ModulesHelp { } {
  puts stderr "grads-1.94b"
}
module-whatis "grads-1.94b"
prepend-path PATH /packages/grads-1.94b/bin:/packages/grads-1.94b/sbin
prepend-path LD_LIBRARY_PATH /packages/grads-1.94b/lib64

grads-2.0.a8

module load grads/2.0.a8 


proc ModulesHelp { } {
  puts stderr "grads-2.0.a8"
}
module-whatis "grads-2.0.a8"
prepend-path PATH /packages/grads-2.0.a8/bin
prepend-path GADDIR /packages/grads-2.0.a8/lib

graphviz-2.24.0

module load graphviz/2.24.0 


proc ModulesHelp { } {
  puts stderr "graphviz-2.24.0"
}
module-whatis "graphviz-2.24.0"
prepend-path PATH /packages/graphviz-2.24.0/bin
prepend-path MANPATH /packages/graphviz-2.24.0/share/man

grass-6.4.0

module load grass/6.4.0 


proc ModulesHelp { } {
  puts stderr "grass-6.4.0"
}
module-whatis "grass-6.4.0"
module load fftw/3.2.2-openmpi
prereq fftw/3.2.2-openmpi
prepend-path PATH /packages/grass-6.4.0/bin
prepend-path LD_LIBRARY_PATH /packages/grass-6.4.0/lib:/packages/grass-6.4.0/lib64
prepend-path MANPATH /packages/grass-6.4.0/share/man

grass-6.4.0 with GUI

module load grass/6.4.0-gui 


proc ModulesHelp { } {
  puts stderr "grass-6.4.0 with GUI"
}
module-whatis "grass-6.4.0 with GUI"
module load fftw/3.2.2-openmpi
prereq fftw/3.2.2-openmpi
prepend-path PATH /packages/grass-gui-6.4.0/bin
prepend-path LD_LIBRARY_PATH /packages/grass-gui-6.4.0/lib:/packages/grass-gui-6.4.0/lib64
prepend-path MANPATH /packages/grass-gui-6.4.0/share/man

Gromacs Version 4.0.4

module load gromacs/4.0.4

Tags: 


proc ModulesHelp { } {
  puts stderr "Gromacs Version 4.0.4"
  puts stderr "TAGS: molecular dynamics"
}
module-whatis "Gromacs Version 4.0.4"

source $env(MODULEPATH)/.gui_warning

module load mvapich/1.0.1-intel
prereq mvapich/1.0.1-intel
prepend-path LD_LIBRARY_PATH /packages/intel/mkl/10.0.2.018/lib/em64t
prepend-path GMXLIB /packages/gromacs-4.0.4/share/gromacs/top
prepend-path PATH /packages/gromacs-4.0.4/bin

Gromacs Version 4.5.1

module load gromacs/4.5.1

Tags: 


proc ModulesHelp { } {
  puts stderr "Gromacs Version 4.5.1"
  puts stderr "TAGS: molecular dynamics"
}
module-whatis "Gromacs Version 4.5.1"

source $env(MODULEPATH)/.gui_warning

module load openmpi/1.4.2-gnu
prereq openmpi/1.4.2-gnu
prepend-path LD_LIBRARY_PATH /packages/fftw-3.2.2/lib64
prepend-path LD_LIBRARY_PATH /packages/gromacs-4.5.1/lib
prepend-path GMXLIB /packages/gromacs-4.5.1/share/gromacs/top
prepend-path INCLUDE /packages/fftw-3.2.2/include
prepend-path PATH /packages/fftw-3.2.2/bin:/packages/gromacs-4.5.1/bin

Gromacs Version 4.5.3

module load gromacs/4.5.3

Tags: 


proc ModulesHelp { } {
  puts stderr "Gromacs Version 4.5.3"
  puts stderr "TAGS: molecular dynamics"
}
module-whatis "Gromacs Version 4.5.3"

source $env(MODULEPATH)/.gui_warning

module load openmpi/1.4.2-gnu 
prereq openmpi/1.4.2-gnu 
prepend-path LD_LIBRARY_PATH /packages/fftw-3.2.2/lib64
prepend-path LD_LIBRARY_PATH /packages/gromacs-4.5.3/lib
prepend-path GMXLIB /packages/gromacs-4.5.3/share/gromacs/top
prepend-path INCLUDE /packages/fftw-3.2.2/include
prepend-path PATH /packages/fftw-3.2.2/bin:/packages/gromacs-4.5.3/bin

Gromacs Version 4.5.4

module load gromacs/4.5.4

Tags: 


proc ModulesHelp { } {
  puts stderr "Gromacs Version 4.5.4"
  puts stderr "TAGS: molecular dynamics"
}
module-whatis "Gromacs Version 4.5.4"

source $env(MODULEPATH)/.gui_warning

module load openmpi/1.4.2-gnu 
prereq openmpi/1.4.2-gnu 
prepend-path LD_LIBRARY_PATH /packages/fftw-3.2.2/lib64
prepend-path LD_LIBRARY_PATH /packages/gromacs/gromacs-4.5.4/lib
prepend-path GMXLIB /packages/gromacs/gromacs-4.5.4/share/gromacs/top
prepend-path INCLUDE /packages/fftw-3.2.2/include
prepend-path PATH /packages/fftw-3.2.2/bin:/packages/gromacs/gromacs-4.5.4/bin
Return to Top

H

haploview-4.1

module load haploview/4.1 


proc ModulesHelp { } {
  puts stderr "haploview-4.1"
}
module-whatis "haploview-4.1"
prepend-path PATH /packages/haploview-4.1
prepend-path PATH /packages/java/latest/bin
prepend-path HAPLOHOME /packages/haploview-4.1
prepend-path CLASSPATH /packages/haploview-4.1/
prepend-path JAVA_HOME /packages/java/latest

hdf5-1.8.6 Parallel version with OpenMPI 1.4.3 and Intel Compilers v12

module load hdf5/1.8.6-intel-openmpi 


proc ModulesHelp { } {
  puts stderr "hdf5-1.8.6 Parallel version with OpenMPI 1.4.3 and Intel Compilers v12"
}
module-whatis "hdf5-1.8.6 Parallel version with OpenMPI 1.4.3 and Intel Compilers v12"

module load openmpi/1.4.3-intel
prereq openmpi/1.4.3-intel

prepend-path PATH            /packages/hdf5-1.8.6-intel-openmpi-1.4.3/bin
prepend-path LD_LIBRARY_PATH /packages/hdf5-1.8.6-intel-openmpi-1.4.3/lib

hdf5-1.8.6 Serial version with Intel Compilers v12

module load hdf5/1.8.6-intel-serial 


proc ModulesHelp { } {
  puts stderr "hdf5-1.8.6 Serial version with Intel Compilers v12"
}
module-whatis "hdf5-1.8.6 Serial version with Intel Compilers v12"

module load intel/12.0
prereq intel/12.0

prepend-path PATH            /packages/hdf5-1.8.6/bin
prepend-path LD_LIBRARY_PATH /packages/hdf5-1.8.6/lib

HTSeq-0.4.6p1 compiled with numpy-1.5.1 and scipy-0.10.0.dev7012

module load htseq/0.4.6p1 


proc ModulesHelp { } {
  puts stderr "HTSeq-0.4.6p1 compiled with numpy-1.5.1 and scipy-0.10.0.dev7012"
}
module-whatis "HTSeq-0.4.6p1 compiled with numpy-1.5.1 and scipy-0.10.0.dev7012"
module load scipy/0.10.0-r7012
prereq scipy/0.10.0-r7012
prepend-path PATH /packages/HTSeq-0.4.6p1/bin
prepend-path LD_LIBRARY_PATH /packages/HTSeq-0.4.6p1/lib
prepend-path PYTHONPATH /packages/HTSeq-0.4.6p1/lib/python

Hydra detects structural variation breakpoints in both unique and duplicated genomic regions.

module load hydra-sv/0.5.3 


proc ModulesHelp { } {
  puts stderr "Hydra detects structural variation breakpoints in both unique and duplicated genomic regions."
}
module-whatis "Hydra detects structural variation breakpoints in both unique and duplicated genomic regions."
prepend-path PATH /packages/hydra-sv-0.5.3/bin
Return to Top

I

impute-050

module load impute/0.5.0 


proc ModulesHelp { } {
  puts stderr "impute-050"
}
module-whatis "impute-050"
prepend-path PATH /packages/impute-050

Intel Compilers 10.1.015, MKL 10.0.2.018

module load intel/10.1

URL: http://software.intel.com/en-us/articles/intel-cluster-studio

Tags: 


proc ModulesHelp { } {
  puts stderr {Intel Compilers 10.1.015, MKL 10.0.2.018
TAGS: compilers
URL: http://software.intel.com/en-us/articles/intel-cluster-studio

Math Kernel Library Link Line Advisor:
http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/
}
}

conflict intel/11.1 intel/12.0

module-whatis "Intel Compilers 10.1.015, MKL 10.0.2.018"

prepend-path PATH            /packages/intel/cce/10.1.015/bin:/packages/intel/fce/10.1.015/bin:/packages/intel/idbe/10.1.015/bin
prepend-path LD_LIBRARY_PATH /packages/intel/cce/10.1.015/lib:/packages/intel/mkl/10.0.2.018/lib/em64t:/packages/intel/fce/10.1.015/lib:/packages/intel/mkl/10.0.2.018/lib/em64t
prepend-path MANPATH         /packages/intel/cce/10.1.015/man:/packages/intel/fce/10.1.015/man:/packages/intel/mkl/10.0.2.018/man
prepend-path MKL_LIB         /packages/intel/mkl/10.0.2.018/lib/em64t
prepend-path MKL_INC         /packages/intel/mkl/10.0.2.018/include
setenv      MKL_LDFLAGS     "-L/packages/intel/mkl/10.0.2.018/lib/em64t -lmkl_solver -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core"
setenv      MKL_NUM_THREADS "1"

Intel Compilers 11.1.072, MKL 10.2.5.035

module load intel/11.1

URL: http://software.intel.com/en-us/articles/intel-cluster-studio

Tags: 


proc ModulesHelp { } {
  puts stderr {Intel Compilers 11.1.072, MKL 10.2.5.035
TAGS: compilers
URL: http://software.intel.com/en-us/articles/intel-cluster-studio

Math Kernel Library Link Line Advisor:
http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/
}
}

conflict intel/10.1 intel/12.0

module-whatis "Intel Compilers 11.1.072, MKL 10.2.5.035"

prepend-path	INTEL_LICENSE_FILE /packages/intel-ct/licenses
prepend-path	CLASSPATH          /packages/intel-ct/itac/8.0.0.011/itac/lib_impi4
prepend-path	CPATH              /packages/intel-ct/mkl/10.2.5.035/include
prepend-path	FPATH              /packages/intel-ct/mkl/10.2.5.035/include
prepend-path	IDB_HOME           /packages/intel-ct/ictce/4.0.0.020/idb/bin/intel64
prepend-path	I_MPI_ROOT         /packages/intel-ct/impi/4.0.0.028
prepend-path	INCLUDE            /packages/intel-ct/mkl/10.2.5.035/include
prepend-path	LD_LIBRARY_PATH    /packages/intel-ct/itac/8.0.0.011/itac/slib_impi4:/packages/intel-ct/mkl/10.2.5.035/lib/em64t:/packages/intel-ct/impi/4.0.0.028/intel64/lib:/packages/intel-ct/Compiler/11.1/072/lib/intel64:/packages/intel-ct/Compiler/11.1/072/lib/intel64
prepend-path	LIBRARY_PATH       /packages/intel-ct/mkl/10.2.5.035/lib/em64t:/packages/intel-ct/Compiler/11.1/072/lib/intel64:/packages/intel-ct/Compiler/11.1/072/lib/intel64
prepend-path	MANPATH            /packages/intel-ct/itac/8.0.0.011/man:/packages/intel-ct/mkl/10.2.5.035/man/en_US:/packages/intel-ct/impi/4.0.0.028/man:/packages/intel-ct/Compiler/11.1/072/man/en_US:/packages/intel-ct/Compiler/11.1/072/man/en_US
prepend-path	MKLROOT            /packages/intel-ct/mkl/10.2.5.035
prepend-path	PATH               /packages/intel-ct/ictce/4.0.0.020/bin:/packages/intel-ct/itac/8.0.0.011/bin:/packages/intel-ct/Compiler/11.1/072/bin/intel64:/packages/intel-ct/Compiler/11.1/072/bin/intel64
prepend-path	VT_LIB_DIR         /packages/intel-ct/itac/8.0.0.011/itac/lib_impi4
prepend-path	VT_ROOT            /packages/intel-ct/itac/8.0.0.011
prepend-path	VT_SLIB_DIR        /packages/intel-ct/itac/8.0.0.011/itac/slib_impi4
setenv	    VT_ADD_LIBS        "-ldwarf -lelf -lvtunwind -lnsl -lm -ldl -lpthread"
setenv	    VT_MPI             "impi4"

Intel Compilers 12.0.0.084, MKL 10.3.1.107

module load intel/12.0

URL: http://software.intel.com/en-us/articles/intel-cluster-studio

Tags: 


proc ModulesHelp { } {
  puts stderr {Intel Compilers 12.0.0.084, MKL 10.3.1.107
TAGS: compilers
URL: http://software.intel.com/en-us/articles/intel-cluster-studio

Math Kernel Library Link Line Advisor:
http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/
}
}

conflict intel/10.1 intel/11.1

module-whatis "Intel Compilers 12.0.0.084, MKL 10.3.1.107"

prepend-path INTEL_LICENSE_FILE  /packages/intel-cs/licenses
prepend-path CPATH               /packages/intel-cs/composerxe-2011.1.107//mkl/include
prepend-path FPATH               /packages/intel-cs/composerxe-2011.1.107/mkl/include
prepend-path INCLUDE             /packages/intel-cs/composerxe-2011.1.107/mkl/include
prepend-path LD_LIBRARY_PATH     /packages/intel-cs/composerxe-2011.1.107/compiler/lib/intel64:/packages/intel-cs/composerxe-2011.1.107/mpirt/lib/intel64:/packages/intel-cs/composerxe-2011.1.107/compiler/lib/intel64:/packages/intel-cs/composerxe-2011.1.107/mkl/lib/intel64
prepend-path LIBRARY_PATH        /packages/intel-cs/composerxe-2011.1.107/compiler/lib/intel64:/packages/intel-cs/composerxe-2011.1.107/compiler/lib/intel64:/packages/intel-cs/composerxe-2011.1.107/mkl/lib/intel64
prepend-path MANPATH             /packages/intel-cs/composerxe-2011.1.107/man/en_US:/packages/intel-cs/composerxe-2011.1.107/man/en_US
prepend-path MIC_LD_LIBRARY_PATH /packages/intel-cs/composerxe-2011.1.107/compiler/lib/mic
prepend-path MKLROOT             /packages/intel-cs/composerxe-2011.1.107/mkl
setenv      NLSPATH             "/packages/intel-cs/composerxe-2011.1.107/compiler/lib/intel64/locale/%l_%t/%N:/packages/intel-cs/composerxe-2011.1.107/mkl/lib/intel64/locale/%l_%t/%N:/packages/intel-cs/composerxe-2011.1.107/debugger/intel64/locale/%l_%t/%N"
prepend-path PATH                /packages/intel-cs/composerxe-2011.1.107/bin/intel64

Intel Compilers 12.1.0 20110811, MKL 10.3.1.107

module load intel/12.1

URL: http://software.intel.com/en-us/articles/intel-cluster-studio

Tags: 


proc ModulesHelp { } {
  puts stderr {Intel Compilers 12.1.0 20110811, MKL 10.3.1.107
TAGS: compilers
URL: http://software.intel.com/en-us/articles/intel-cluster-studio

Math Kernel Library Link Line Advisor:
http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/
}
}

conflict intel/10.1 intel/11.1 intel/12.0

module load java
prereq java

module-whatis "Intel Compilers 12.1.0 20110811, MKL 10.3.1.107"

prepend-path INTEL_LICENSE_FILE  /packages/intel-12.1/licenses
prepend-path CPATH               /packages/intel-12.1/composerxe/mkl/include
prepend-path FPATH               /packages/intel-12.1/composerxe/mkl/include
prepend-path INCLUDE             /packages/intel-12.1/composerxe/mkl/include
prepend-path LD_LIBRARY_PATH     /packages/intel-12.1/composerxe/compiler/lib/intel64:/packages/intel-12.1/composerxe/mpirt/lib/intel64:/packages/intel-12.1/composerxe/compiler/lib/intel64:/packages/intel-12.1/composerxe/mkl/lib/intel64
prepend-path LIBRARY_PATH        /packages/intel-12.1/composerxe/compiler/lib/intel64:/packages/intel-12.1/composerxe/compiler/lib/intel64:/packages/intel-12.1/composerxe/mkl/lib/intel64
prepend-path MANPATH             /packages/intel-12.1/composerxe/man/en_US:/packages/intel-12.1/composerxe/man/en_US
prepend-path MIC_LD_LIBRARY_PATH /packages/intel-12.1/composerxe/compiler/lib/mic
prepend-path MKLROOT             /packages/intel-12.1/composerxe/mkl
setenv      NLSPATH             "/packages/intel-12.1/composerxe/compiler/lib/intel64/locale/%l_%t/%N:/packages/intel-12.1/composerxe/mkl/lib/intel64/locale/%l_%t/%N:/packages/intel-12.1/composerxe/debugger/intel64/locale/%l_%t/%N"
prepend-path PATH                /packages/intel-12.1/composerxe/bin

Intel MPI Library 4.0.1.007 with Intel Compilers v12

module load intel-mpi/4.0

URL: http://software.intel.com/en-us/articles/intel-cluster-studio

Tags: 


proc ModulesHelp { } {
  puts stderr "Intel MPI Library 4.0.1.007 with Intel Compilers v12"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://software.intel.com/en-us/articles/intel-cluster-studio"
  puts stderr {
Intel MPI uses mpirun rather than mpiexec. Additionally, you must specify the
number of CPUs to run on, it is not automatically determined. For example, run
this on a 16 cpu job:

mpirun -n 16 YourMPIBinary

The standard mpi compilation binaries mpicc, mpif90, etc use the GNU compilers
by default (gcc, gfortran, etc). If you wish you use the intel compilers you
must run mpiicc, mpiicpc, or mpiifort instead. You can also set an environment
variable to set a compiler manually as follows:

I_MPI_CC=icc    mpicc  ...
I_MPI_CXX=icpc  mpicxx ...
I_MPI_F77=ifort mpif77 ...
I_MPI_F90=ifort mpif90 ...
}
}

module-whatis "Intel MPI Library 4.0.1.007 with Intel Compilers v12"

conflict mvapich mvapich2 openmpi intel-mpi

module load intel/12.0
prereq intel/12.0

prepend-path	CLASSPATH       /packages/intel-cs/itac/8.0.1.009/itac/lib_impi4
prepend-path	I_MPI_ROOT      /packages/intel-cs/impi/4.0.1.007
prepend-path	LD_LIBRARY_PATH /packages/intel-cs/impi/4.0.1.007/lib64
prepend-path	LD_LIBRARY_PATH /packages/intel-cs/itac/8.0.1.009/itac/slib_impi4
prepend-path	MANPATH         /packages/intel-cs/impi/4.0.1.007/man
prepend-path	MANPATH         /packages/intel-cs/itac/8.0.1.009/man
prepend-path	PATH            /packages/intel-cs/impi/4.0.1.007/bin64
prepend-path	PATH            /packages/intel-cs/itac/8.0.1.009/bin
setenv	    VT_ADD_LIBS     "-ldwarf -lelf -lvtunwind -lnsl -lm -ldl -lpthread"
prepend-path	VT_LIB_DIR      /packages/intel-cs/itac/8.0.1.009/itac/lib_impi4
setenv    	VT_MPI          "impi4"
prepend-path	VT_ROOT         /packages/intel-cs/itac/8.0.1.009
prepend-path	VT_SLIB_DIR     /packages/intel-cs/itac/8.0.1.009/itac/slib_impi4
Return to Top

J

Java jdk1.6.0_21

module load java/1.6.0_21

Tags: 


proc ModulesHelp { } {
  puts stderr "Java jdk1.6.0_21"
  puts stderr "TAGS: java, compilers"
}

module-whatis "Java jdk1.6.0_21"

if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
  puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
  puts stderr "the following command to launch an interactive session before attempting to use"
  puts stderr "or compile Java programs: qsub -X -I"
  exit
}

prepend-path PATH      /packages/java/jdk1.6.0_21/bin
prepend-path MANPATH   /packages/java/jdk1.6.0_21/man
setenv      JAVA_HOME /packages/java/jdk1.6.0_21

Java jdk1.6.0_22

module load java/1.6.0_22

Tags: 


proc ModulesHelp { } {
  puts stderr "Java jdk1.6.0_22"
  puts stderr "TAGS: java, compilers"
}

module-whatis "Java jdk1.6.0_22"

if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
  puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
  puts stderr "the following command to launch an interactive session before attempting to use"
  puts stderr "or compile Java programs: qsub -X -I"
  exit
}

prepend-path PATH      /packages/java/jdk1.6.0_22/bin
prepend-path MANPATH   /packages/java/jdk1.6.0_22/man
setenv      JAVA_HOME /packages/java/jdk1.6.0_22

Java jdk1.6.0_24

module load java/1.6.0_24

Tags: 


proc ModulesHelp { } {
  puts stderr "Java jdk1.6.0_24"
  puts stderr "TAGS: java, compilers"
}

module-whatis "Java jdk1.6.0_24"

if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
  puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
  puts stderr "the following command to launch an interactive session before attempting to use"
  puts stderr "or compile Java programs: qsub -X -I"
  exit
}

prepend-path PATH      /packages/java/jdk1.6.0_24/bin
prepend-path MANPATH   /packages/java/jdk1.6.0_24/man
setenv      JAVA_HOME /packages/java/jdk1.6.0_24

Java jdk1.6.0_25

module load java/1.6.0_25

Tags: 


proc ModulesHelp { } {
  puts stderr "Java jdk1.6.0_25"
  puts stderr "TAGS: java, compilers"
}

module-whatis "Java jdk1.6.0_25"

if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
  puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
  puts stderr "the following command to launch an interactive session before attempting to use"
  puts stderr "or compile Java programs: qsub -X -I"
  exit
}

prepend-path PATH      /packages/java/jdk1.6.0_25/bin
prepend-path MANPATH   /packages/java/jdk1.6.0_25/man
setenv      JAVA_HOME /packages/java/jdk1.6.0_25

Java jdk1.6.0_26

module load java/1.6.0_26

Tags: 


proc ModulesHelp { } {
  puts stderr "Java jdk1.6.0_26"
  puts stderr "TAGS: java, compilers"
}

module-whatis "Java jdk1.6.0_26"

if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
  puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
  puts stderr "the following command to launch an interactive session before attempting to use"
  puts stderr "or compile Java programs: qsub -X -I"
  exit
}

prepend-path PATH      /packages/java/jdk1.6.0_26/bin
prepend-path MANPATH   /packages/java/jdk1.6.0_26/man
setenv      JAVA_HOME /packages/java/jdk1.6.0_26

Java jdk1.6.0_30

module load java/1.6.0_30

Tags: 


proc ModulesHelp { } {
  puts stderr "Java jdk1.6.0_30"
  puts stderr "TAGS: java, compilers"
}

module-whatis "Java jdk1.6.0_30"

if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
  puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
  puts stderr "the following command to launch an interactive session before attempting to use"
  puts stderr "or compile Java programs: qsub -X -I"
  exit
}

prepend-path PATH      /packages/java/jdk1.6.0_30/bin
prepend-path MANPATH   /packages/java/jdk1.6.0_30/man
setenv      JAVA_HOME /packages/java/jdk1.6.0_30
Return to Top

L

lapack-3.2.2

module load lapack/3.2.2

Tags: 


proc ModulesHelp { } {
  puts stderr "lapack-3.2.2"
  puts stderr "TAGS: numerical libraries"
}
module-whatis "lapack-3.2.2"
prepend-path PATH /packages/lapack-3.2.2
prepend-path LD_LIBRARY_PATH /packages/lapack-3.2.2

lpsolve 5.5.2.0

module load lpsolve/5.5.2.0

Tags: 


proc ModulesHelp { } {
  puts stderr "lpsolve 5.5.2.0"
  puts stderr "TAGS: matlab"
}
module-whatis "lpsolve 5.5.2.0"

source $env(MODULEPATH)/.gui_warning




prepend-path PATH /packages/lpsolve/lpsolve-5.5.2.0/bin/
prepend-path LD_LIBRARY_PATH /packages/lpsolve/lpsolve-5.5.2.0/lib64/
Return to Top

M

maq-0.7.1

module load maq/0.7.1 


proc ModulesHelp { } {
  puts stderr "maq-0.7.1"
}
module-whatis "maq-0.7.1"
prepend-path PATH /packages/maq-0.7.1/bin

Matlab R2007a

module load matlab/R2007a

Tags: 


proc ModulesHelp { } {
  puts stderr "Matlab R2007a"
  puts stderr "TAGS: matlab"
}
module-whatis "Matlab R2007a"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/MatlabR2007a/bin
prepend-path LD_LIBRARY_PATH /packages/MatlabR2007a/bin/glnxa64/

Matlab R2010a

module load matlab/R2010a

Tags: 


proc ModulesHelp { } {
  puts stderr "Matlab R2010a"
  puts stderr "TAGS: matlab"
}
module-whatis "Matlab R2010a"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/MatlabR2010a/bin

Matlab R2010b

module load matlab/R2010b

Tags: 


proc ModulesHelp { } {
  puts stderr "Matlab R2010b"
  puts stderr "TAGS: matlab"
}
module-whatis "Matlab R2010b"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/MatlabR2010b/bin

Matlab R2011a

module load matlab/R2011a

Tags: 


proc ModulesHelp { } {
  puts stderr "Matlab R2011a"
  puts stderr "TAGS: matlab"
}
module-whatis "Matlab R2011a"

source $env(MODULEPATH)/.gui_warning

module load cplex/12.3
prereq cplex/12.3

prepend-path PATH /packages/MatlabR2011a/bin
prepend-path LD_LIBRARY_PATH /packages/MatlabR2011a/bin/glnxa64/

Matlab R2011b

module load matlab/R2011b

Tags: 


proc ModulesHelp { } {
  puts stderr "Matlab R2011b"
  puts stderr "TAGS: matlab"
}
module-whatis "Matlab R2011b"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/MatlabR2011b/bin
prepend-path LD_LIBRARY_PATH /packages/MatlabR2011b/bin/glnxa64/

md5deep-3.4

module load md5deep/3.4 


proc ModulesHelp { } {
  puts stderr "md5deep-3.4"
}
module-whatis "md5deep-3.4"
prepend-path PATH /packages/md5deep-3.4/bin
prepend-path MANPATH /packages/md5deep-3.4/share/man

Meep-1.1.1 MPI version with Intel v12, MKL v10.3, OpenMPI 1.4.3

module load meep/1.1.1-mpi

URL: http://ab-initio.mit.edu/wiki/index.php/Meep

Tags: 


proc ModulesHelp { } {
  puts stderr "Meep-1.1.1 MPI version with Intel v12, MKL v10.3, OpenMPI 1.4.3"
  puts stderr "TAGS: finite difference"
  puts stderr "url: http://ab-initio.mit.edu/wiki/index.php/Meep"
}
module-whatis "Meep-1.1.1 MPI version with Intel v12, MKL v10.3, OpenMPI 1.4.3"
module load hdf5/1.8.6-intel-openmpi 
prereq hdf5/1.8.6-intel-openmpi 
prepend-path PATH /packages/meep-1.1.1-mpi/bin
prepend-path LD_LIBRARY_PATH /packages/meep-1.1.1-mpi/lib:/packages/gsl/lib
prepend-path MANPATH /packages/meep-1.1.1-mpi/share/man

Meep-1.1.1 with Intel v12 and MKL v10.3

module load meep/1.1.1

URL: http://ab-initio.mit.edu/wiki/index.php/Meep

Tags: 


proc ModulesHelp { } {
  puts stderr "Meep-1.1.1 with Intel v12 and MKL v10.3"
  puts stderr "TAGS: finite difference"
  puts stderr "url: http://ab-initio.mit.edu/wiki/index.php/Meep"
}
module-whatis "Meep-1.1.1 with Intel v12 and MKL v10.3"
module load hdf5/1.8.6-intel-serial
prereq hdf5/1.8.6-intel-serial
prepend-path PATH /packages/meep-1.1.1/bin
prepend-path LD_LIBRARY_PATH /packages/meep-1.1.1/lib:/packages/gsl/lib
prepend-path MANPATH /packages/meep-1.1.1/share/man

MeshBuilder

module load tribs/3.0-meshbuilder

Tags: 


proc ModulesHelp { } {
  puts stderr "MeshBuilder"
  puts stderr "TAGS: fluid dynamics, meshing"
}
module-whatis "MeshBuilder"
prepend-path PATH /packages/MeshBuilder

mira_3.4.0 binaries static

module load mira/3.4.0

URL: http://sourceforge.net/projects/mira-assembler/


proc ModulesHelp { } {
  puts stderr "mira_3.4.0 binaries static"
  puts stderr "URL:  http://sourceforge.net/projects/mira-assembler/"
}
module-whatis "mira_3.4.0 binaries static"
prepend-path PATH /packages/mira_3.4.0_prod_linux-gnu_x86_64_static/bin

mirdeep

module load mirdeep/2 


proc ModulesHelp { } {
  puts stderr "mirdeep2"
}
module-whatis "mirdeep"
prepend-path PATH /packages/mirdeep2
prepend-path PATH /packages/mirdeep2/essentials/bowtie-0.12.5
prepend-path PATH /packages/mirdeep2/essentials/ViennaRNA-1.8.4/install_dir/bin
prepend-path PATH /packages/mirdeep2/essentials/randfold-2.0
prepend-path PATH PERL5LIB  /packages/mirdeep2/lib/

mosaik-2.1.33

module load mosaik/2.1.33

URL: http://code.google.com/p/mosaik-aligner/

Tags: 


proc ModulesHelp { } {
  puts stderr "mosaik-2.1.33"
  puts stderr "TAGS: bioinformatics, genomics"
  puts stderr "url: http://code.google.com/p/mosaik-aligner/"
}
module-whatis "mosaik-2.1.33"
prepend-path PATH /packages/mosaik-2.1.33

mothur 1.20.1

module load mothur/1.20.1 


proc ModulesHelp { } {
  puts stderr "mothur 1.20.1"
}
module-whatis "mothur 1.20.1"

prepend-path PATH /packages/mothur/1.20.1
prepend-path PATH /packages/mothur/1.20.1/blast

mpb-1.4.2 with Intel v12 and MKL v10.3

module load mpb/1.4.2

URL: http://ab-initio.mit.edu/wiki/index.php/MIT_Photonic_Bands


proc ModulesHelp { } {
  puts stderr "mpb-1.4.2 with Intel v12 and MKL v10.3"
  puts stderr "URL: http://ab-initio.mit.edu/wiki/index.php/MIT_Photonic_Bands"
}
module-whatis "mpb-1.4.2 with Intel v12 and MKL v10.3"
module load hdf5/1.8.6-intel-serial
prereq hdf5/1.8.6-intel-serial
prepend-path PATH /packages/mpb-1.4.2/bin
prepend-path LD_LIBRARY_PATH /packages/mpb-1.4.2/lib
prepend-path MANPATH /packages/mpb-1.4.2/share/man

mpb-1.4.2 with Intel v12, MKL v10.3, OpenMPI 1.4.3

module load mpb/1.4.2-mpi

URL: http://ab-initio.mit.edu/wiki/index.php/MIT_Photonic_Bands


proc ModulesHelp { } {
  puts stderr "mpb-1.4.2 with Intel v12, MKL v10.3, OpenMPI 1.4.3"
  puts stderr "URL: http://ab-initio.mit.edu/wiki/index.php/MIT_Photonic_Bands"
}
module-whatis "mpb-1.4.2 with Intel v12, MKL v10.3, OpenMPI 1.4.3"
module load hdf5/1.8.6-intel-openmpi
prereq hdf5/1.8.6-intel-openmpi
prepend-path PATH /packages/mpb-1.4.2-mpi/bin
prepend-path LD_LIBRARY_PATH /packages/mpb-1.4.2-mpi/lib
prepend-path MANPATH /packages/mpb-1.4.2-mpi/share/man

mpiblast-1.5.0

module load mpiblast/1.5.0

Tags: 


proc ModulesHelp { } {
  puts stderr "mpiblast-1.5.0"
  puts stderr "TAGS: mpi, bioinformatics"
}
module-whatis "mpiblast-1.5.0"
module load mvapich/1.0.1-intel
prereq mvapich/1.0.1-intel
prepend-path PATH /packages/mpiblast-1.5.0/bin

mrbayes-3.1.2 serial and parallel w/gcc-mvapich-1.0.1

module load mrbayes/3.1.2

Tags: 


proc ModulesHelp { } {
  puts stderr "mrbayes-3.1.2 serial and parallel w/gcc-mvapich-1.0.1"
  puts stderr "TAGS: bioinformatics, phylogenetics"
}
module-whatis "mrbayes-3.1.2 serial and parallel w/gcc-mvapich-1.0.1"
module load mvapich/1.0.1-gnu
prereq mvapich/1.0.1-gnu
prepend-path PATH /packages/mrbayes-3.1.2/bin

MUMmer-3.20

module load mummer/3.20

URL: http://mummer.sourceforge.net/

Tags: 


proc ModulesHelp { } {
  puts stderr "MUMmer-3.20"
  puts stderr "TAGS: bioinformatics, sequencing"
  puts stderr "url: http://mummer.sourceforge.net/"
}
module-whatis "MUMmer-3.20"
prepend-path PATH /packages/MUMmer-320

MUMmer-3.21

module load mummer/3.21

URL: http://mummer.sourceforge.net/

Tags: 


proc ModulesHelp { } {
  puts stderr "MUMmer-3.21"
  puts stderr "TAGS: bioinformatics, sequencing"
  puts stderr "url: http://mummer.sourceforge.net/"
}
module-whatis "MUMmer-3.21"
prepend-path PATH /packages/MUMmer-3.21:/packages/MUMmer-3.21/scripts:/packages/MUMmer-3.21/aux_bin

MUMmer-3.22

module load mummer/3.22

URL: http://mummer.sourceforge.net/

Tags: 


proc ModulesHelp { } {
  puts stderr "MUMmer-3.22"
  puts stderr "TAGS: bioinformatics, sequencing"
  puts stderr "url: http://mummer.sourceforge.net/"
}
module-whatis "MUMmer-3.22"
prepend-path PATH /packages/MUMmer-3.22:/packages/MUMmer-3.22/scripts:/packages/MUMmer-3.22/aux_bin

MVAPICH 1.0.1 with the GNU compilers

module load mvapich/1.0.1-gnu

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH 1.0.1 with the GNU compilers"
  puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH 1.0.1 with the GNU compilers"

conflict mvapich mvapich2 openmpi intel-mpi

prepend-path PATH            /packages/gcc-mvapich-1.0.1/bin:/packages/mpiexec-0.84b/bin
prepend-path LD_LIBRARY_PATH /packages/gcc-mvapich-1.0.1/lib:/packages/gcc-mvapich-1.0.1/lib/shared

MVAPICH 1.0.1 with the Intel Compilers v10

module load mvapich/1.0.1-intel

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH 1.0.1 with the Intel Compilers v10"
  puts stderr "TAGS: mpi"
}

module-whatis "MVAPICH 1.0.1 with the Intel Compilers v10"

conflict mvapich mvapich2 openmpi intel-mpi

module load intel/10.1
prereq intel/10.1

prepend-path PATH /packages/intel-mvapich-1.0.1/bin:/packages/mpiexec-0.84b/bin
prepend-path LD_LIBRARY_PATH /packages/intel-mvapich-1.0.1/lib:/packages/intel-mvapich-1.0.1/lib/shared

MVAPICH 1.0.1 with the PGI compilers (FORTRAN ONLY)

module load mvapich/1.0.1-pgi

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH 1.0.1 with the PGI compilers (FORTRAN ONLY)"
  puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH 1.0.1 with the PGI compilers (FORTRAN ONLY)"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/pgi-mvapich-1.0.1/bin:/packages/mpiexec-0.84b/bin
prepend-path MPI_INC /packages/pgi-mvapich-1.0.1/include
prepend-path MPI_LIB /packages/pgi-mvapich-1.0.1/lib
prepend-path LD_LIBRARY_PATH /packages/pgi-mvapich-1.0.1/lib

MVAPICH 1.1 compiled with the Intel 11.1 compilers

module load mvapich/1.1-intel

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH 1.1 compiled with the Intel 11.1 compilers"
  puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH 1.1 compiled with the Intel 11.1 compilers"

conflict mvapich mvapich2 openmpi intel-mpi

module load intel/11.1
prereq intel/11.1

prepend-path PATH            /packages/mpiexec-0.84b/bin:/packages/intel-mvapich-1.1/bin
prepend-path MANPATH         /packages/intel-mvapich-1.1/share/man
prepend-path LD_LIBRARY_PATH /packages/intel-mvapich-1.1/lib/shared:/packages/intel-mvapich-1.1/lib

MVAPICH 1.1 with the GNU compilers

module load mvapich/1.1-gnu

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH 1.1 with the GNU compilers"
  puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH 1.1 with the GNU compilers"

conflict mvapich mvapich2 openmpi intel-mpi

prepend-path PATH            /packages/mpiexec-0.84b/bin:/packages/gcc-mvapich-1.1/bin
prepend-path MANPATH         /packages/gcc-mvapich-1.1/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-mvapich-1.1/lib/shared:/packages/gcc-mvapich-1.1/lib

MVAPICH 1.1 with the PGI compilers (FORTRAN ONLY)

module load mvapich/1.1-pgi

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH 1.1 with the PGI compilers (FORTRAN ONLY)"
  puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH 1.1 with the PGI compilers (FORTRAN ONLY)"

conflict mvapich mvapich2 openmpi intel-mpi

module load pgi/7.0
prereq pgi/7.0

prepend-path PATH            /packages/mpiexec-0.84b/bin:/packages/pgi-mvapich-1.1/bin
prepend-path MANPATH         /packages/pgi-mvapich-1.1/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-mvapich-1.1/lib/shared:/packages/pgi-mvapich-1.1/lib

MVAPICH2 1.2RC2 with the GNU compilers

module load mvapich2/1.2rc2-gnu

URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH2 1.2RC2 with the GNU compilers"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis "MVAPICH2 1.2RC2 with the GNU compilers"

conflict mvapich mvapich2 openmpi intel-mpi

prepend-path PATH            /packages/mpiexec-0.84b/bin:/packages/gcc-mvapich2-1.2rc2/bin
prepend-path LD_LIBRARY_PATH /packages/gcc-mvapich2-1.2rc2/lib

set-alias "mpiexec" "mpiexec --comm=pmi"

MVAPICH2 1.2RC2 with the Intel Compilers v10

module load mvapich2/1.2rc2-intel

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH2 1.2RC2 with the Intel Compilers v10"
  puts stderr "TAGS: mpi"
}
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/10.1
prereq intel/10.1
module-whatis "MVAPICH2 1.2RC2 with the Intel Compilers v10"
prepend-path PATH /packages/intel-mvapich2-1.2rc2/bin:/packages/mpiexec-0.84b/bin
prepend-path LD_LIBRARY_PATH /packages/intel-mvapich2-1.2rc2/lib

mvapich2 1.5 compiled with Intel v11

module load mvapich2/1.5-intel

URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/

Tags: 


proc ModulesHelp { } {
  puts stderr "mvapich2 1.5 compiled with Intel v11"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis   "mvapich2 1.5 compiled with Intel v11"

conflict mvapich mvapich2 openmpi intel-mpi

module load intel/11.1
prereq intel/11.1

prepend-path PATH            /packages/mpiexec-0.84b/bin:/packages/intel-mvapich2-1.5/bin
prepend-path MANPATH         /packages/intel-mvapich2-1.5/share/man
prepend-path LD_LIBRARY_PATH /packages/intel-mvapich2-1.5/lib

set-alias "mpiexec" "mpiexec --comm=pmi"

MVAPICH2 1.5 with the GNU compilers

module load mvapich2/1.5-gnu

URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH2 1.5 with the GNU compilers"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis "MVAPICH2 1.5 with the GNU compilers"

conflict mvapich mvapich2 openmpi intel-mpi

prepend-path PATH            /packages/mpiexec-0.84b/bin:/packages/gcc-mvapich2-1.5/bin
prepend-path MANPATH         /packages/gcc-mvapich2-1.5/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-mvapich2-1.5/lib

set-alias "mpiexec" "mpiexec --comm=pmi"

MVAPICH2 1.5 with the GNU compilers - DEBUGGING ONLY

module load mvapich2/1.5-gnu-debug

URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH2 1.5 with the GNU compilers - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis "MVAPICH2 1.5 with the GNU compilers - DEBUGGING ONLY"

conflict mvapich mvapich2 openmpi intel-mpi

prepend-path PATH            /packages/mpiexec-0.84b/bin:/packages/gcc-mvapich2-1.5-debugging/bin
prepend-path MANPATH         /packages/gcc-mvapich2-1.5-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-mvapich2-1.5-debugging/lib

set-alias "mpiexec" "mpiexec --comm=pmi"

MVAPICH2 1.5 with the Intel Compilers v11 - DEBUGGING ONLY

module load mvapich2/1.5-intel-debug

URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH2 1.5 with the Intel Compilers v11 - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis "MVAPICH2 1.5 with the Intel Compilers v11 - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/11.1
prereq intel/11.1
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/intel-mvapich2-1.5-debugging/bin
prepend-path MANPATH /packages/intel-mvapich2-1.5-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/intel-mvapich2-1.5-debugging/lib
set-alias "mpiexec" "mpiexec --comm=pmi"

MVAPICH2 1.5 with the PGI compilers (FORTRAN ONLY)

module load mvapich2/1.5-pgi

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH2 1.5 with the PGI compilers (FORTRAN ONLY)"
  puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH2 1.5 with the PGI compilers (FORTRAN ONLY)"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/pgi-mvapich2-1.5/bin
prepend-path MANPATH /packages/pgi-mvapich2-1.5/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-mvapich2-1.5/lib
set-alias "mpiexec" "mpiexec --comm=pmi"

MVAPICH2 1.5 with the PGI compilers (FORTRAN ONLY) - DEBUGGING ONLY

module load mvapich2/1.5-pgi-debug

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH2 1.5 with the PGI compilers (FORTRAN ONLY) - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH2 1.5 with the PGI compilers (FORTRAN ONLY) - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/pgi-mvapich2-1.5-debugging/bin
prepend-path MANPATH /packages/pgi-mvapich2-1.5-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-mvapich2-1.5-debugging/lib
set-alias "mpiexec" "mpiexec --comm=pmi"

mvapich2 1.6 compiled with Intel v11

module load mvapich2/1.6-intel

URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/

Tags: 


proc ModulesHelp { } {
  puts stderr "mvapich2 1.6 compiled with Intel v12"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}

module-whatis "mvapich2 1.6 compiled with Intel v11"

conflict mvapich mvapich2 openmpi intel-mpi

module load intel/12.0
prereq intel/12.0

prepend-path PATH            /packages/mpiexec-0.84b/bin:/packages/intel12-mvapich2-1.6/bin
prepend-path MANPATH         /packages/intel12-mvapich2-1.6/share/man
prepend-path LD_LIBRARY_PATH /packages/intel12-mvapich2-1.6/lib

set-alias "mpiexec" "mpiexec --comm=pmi"

MVAPICH2 1.6 with the GNU compilers

module load mvapich2/1.6-gnu

URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH2 1.6 with the GNU compilers"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis "MVAPICH2 1.6 with the GNU compilers"

conflict mvapich mvapich2 openmpi intel-mpi

prepend-path PATH            /packages/mpiexec-0.84b/bin:/packages/gcc-mvapich2-1.6/bin
prepend-path MANPATH         /packages/gcc-mvapich2-1.6/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-mvapich2-1.6/lib

set-alias "mpiexec" "mpiexec --comm=pmi"

MVAPICH2 1.6 with the GNU compilers - DEBUGGING ONLY

module load mvapich2/1.6-gnu-debug

URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH2 1.6 with the GNU compilers - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis "MVAPICH2 1.6 with the GNU compilers - DEBUGGING ONLY"

conflict mvapich mvapich2 openmpi intel-mpi

prepend-path PATH            /packages/mpiexec-0.84b/bin:/packages/gcc-mvapich2-1.6-debugging/bin
prepend-path MANPATH         /packages/gcc-mvapich2-1.6-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-mvapich2-1.6-debugging/lib

set-alias "mpiexec" "mpiexec --comm=pmi"

MVAPICH2 1.6 with the Intel Compilers v12 - DEBUGGING ONLY

module load mvapich2/1.6-intel-debug

URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH2 1.6 with the Intel Compilers v12 - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}

module-whatis "MVAPICH2 1.6 with the Intel Compilers v12 - DEBUGGING ONLY"

conflict mvapich mvapich2 openmpi intel-mpi

module load intel/12.0
prereq intel/12.0

prepend-path PATH            /packages/mpiexec-0.84b/bin:/packages/intel12-mvapich2-1.6-debugging/bin
prepend-path MANPATH         /packages/intel12-mvapich2-1.6-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/intel12-mvapich2-1.6-debugging/lib

set-alias "mpiexec" "mpiexec --comm=pmi"

MVAPICH2 1.6 with the PGI compilers (FORTRAN ONLY)

module load mvapich2/1.6-pgi

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH2 1.6 with the PGI compilers (FORTRAN ONLY)"
  puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH2 1.6 with the PGI compilers (FORTRAN ONLY)"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/pgi-mvapich2-1.6/bin
prepend-path MANPATH /packages/pgi-mvapich2-1.6/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-mvapich2-1.6/lib
set-alias "mpiexec" "mpiexec --comm=pmi"

MVAPICH2 1.6 with the PGI compilers (FORTRAN ONLY) - DEBUGGING ONLY

module load mvapich2/1.6-pgi-debug

Tags: 


proc ModulesHelp { } {
  puts stderr "MVAPICH2 1.6 with the PGI compilers (FORTRAN ONLY) - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH2 1.6 with the PGI compilers (FORTRAN ONLY) - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/pgi-mvapich2-1.6-debugging/bin
prepend-path MANPATH /packages/pgi-mvapich2-1.6-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-mvapich2-1.6-debugging/lib
set-alias "mpiexec" "mpiexec --comm=pmi"
Return to Top

N

NAMD 2.6

module load namd/2.6

Tags: 


proc ModulesHelp { } {
  puts stderr "NAMD 2.6"
  puts stderr "TAGS: molecular dynamics"
}
module-whatis "NAMD 2.6"
module load openmpi/1.2.7-gnu
prereq openmpi/1.2.7-gnu
prepend-path PATH /packages/NAMD-2.6

NAMD 2.7b1

module load namd/2.7b1

Tags: 


proc ModulesHelp { } {
  puts stderr "NAMD 2.7b1"
  puts stderr "TAGS: molecular dynamics"
}
module-whatis "NAMD 2.7b1"
module load mvapich/1.0.1-intel
prereq mvapich/1.0.1-intel
prepend-path PATH /packages/NAMD-2.7b1

ncbi-blast-2.2.23

module load ncbi-blast/2.2.23

Tags: 


proc ModulesHelp { } {
  puts stderr "ncbi-blast-2.2.23"
  puts stderr "TAGS: bioinformatics"
}
module-whatis "ncbi-blast-2.2.23"
prepend-path PATH /packages/ncbi-blast-2.2.23/c++/ReleaseMT/bin

ncl-5.1.1

module load ncl/5.1.1

URL: http://hydrodictyon.eeb.uconn.edu/ncl/

Tags: 


proc ModulesHelp { } {
  puts stderr "ncl-5.1.1"
  puts stderr "TAGS: bioinformatics"
  puts stderr "url: http://hydrodictyon.eeb.uconn.edu/ncl/"
}
module-whatis "ncl-5.1.1"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/ncl/ncl-5.1.1/bin:/packages/ncl/ncl-5.1.1/sbin
prepend-path LD_LIBRARY_PATH /packages/ncl/ncl-5.1.1/lib:/packages/ncl/ncl-5.1.1/lib64:/packages/ncl/ncl-5.1.1/lib64/atlas
prepend-path MANPATH /packages/ncl/ncl-5.1.1/share/man
prepend-path CFLAGS "-I/packages/ncl/ncl-5.1.1/include"
prepend-path NCARG_ROOT /packages/ncl/ncl-5.1.1
prepend-path NCARG_LIB /packages/ncl/ncl-5.1.1/lib64/ncarg
prepend-path NCARG_DATABASE /packages/ncl/ncl-5.1.1/lib64/ncarg/database
prepend-path NCARG_FONTCAPS /packages/ncl/ncl-5.1.1/lib64/ncarg/fontcaps
prepend-path NCARG_GRAPHCAPS /packages/ncl/ncl-5.1.1/lib64/ncarg/graphcaps
prepend-path NCARG_NCARG /packages/ncl/ncl-5.1.1/share/ncarg

ncl-6.0.0

module load ncl/6.0.0

URL: http://hydrodictyon.eeb.uconn.edu/ncl/

Tags: 


proc ModulesHelp { } {
  puts stderr "ncl-6.0.0"
  puts stderr "TAGS: bioinformatics"
  puts stderr "url: http://hydrodictyon.eeb.uconn.edu/ncl/"
}
module-whatis "ncl-6.0.0"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/ncl/ncl-6.0.0/bin:/packages/ncl/ncl-6.0.0/sbin
prepend-path LD_LIBRARY_PATH /packages/ncl/ncl-6.0.0/lib
prepend-path MANPATH /packages/ncl/ncl-6.0.0/share/man
prepend-path CFLAGS "-I/packages/ncl/ncl-6.0.0/include"
prepend-path NCARG_ROOT /packages/ncl/ncl-6.0.0
prepend-path NCARG_LIB /packages/ncl/ncl-6.0.0/lib/ncarg
prepend-path NCARG_DATABASE /packages/ncl/ncl-6.0.0/lib/ncarg/database
prepend-path NCARG_FONTCAPS /packages/ncl/ncl-6.0.0/lib/ncarg/fontcaps
prepend-path NCARG_GRAPHCAPS /packages/ncl/ncl-6.0.0/lib/ncarg/graphcaps

ncview-1.93g

module load ncview/1.93g

URL: http://meteora.ucsd.edu/~pierce/ncview_home_page.html

Tags: 


proc ModulesHelp { } {
  puts stderr "ncview-1.93g"
  puts stderr "TAGS: netcdf, visualization"
  puts stderr "url: http://meteora.ucsd.edu/~pierce/ncview_home_page.html"
}
module-whatis "ncview-1.93g"
prepend-path PATH /packages/ncview-1.93g/bin
prepend-path MANPATH /packages/ncview-1.93g/man

netlogo-4.1.3

module load netlogo/4.1.3 


proc ModulesHelp { } {
  puts stderr "netlogo-4.1.3"
}

module-whatis "netlogo-4.1.3"

source $env(MODULEPATH)/.gui_warning

module load java/1.6.0_25
prereq java/1.6.0_25

prepend-path PATH /packages/netlogo/netlogo-4.1.3

Network Common Data Form version 3.6.3 for gnu compilers

module load netcdf/3.6.3-gnu

Tags: 


proc ModulesHelp { } {
  puts stderr "Network Common Data Form version 3.6.3 for gnu compilers"
  puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
}
module-whatis "Network Common Data Form version 3.6.3 for gnu compilers"
prepend-path PATH /packages/netcdf-3.6.3-gnu/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-3.6.3-gnu/lib
prepend-path NETCDF /packages/netcdf-3.6.3-gnu
prepend-path INCLUDE /packages/netcdf-3.6.3-gnu/include
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"

Network Common Data Form version 3.6.3 for pgi compilers

module load netcdf/3.6.3-pgi

Tags: 


proc ModulesHelp { } {
  puts stderr "Network Common Data Form version 3.6.3 for pgi compilers"
  puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
}
module-whatis "Network Common Data Form version 3.6.3 for pgi compilers"
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/netcdf-3.6.3/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-3.6.3/lib
prepend-path NETCDF /packages/netcdf-3.6.3

Network Common Data Form version 4.0.1 for gnu compilers

module load netcdf/4.0.1-gnu

Tags: 


proc ModulesHelp { } {
  puts stderr "Network Common Data Form version 4.0.1 for gnu compilers"
  puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
}
module-whatis "Network Common Data Form version 4.0.1 for gnu compilers"
prepend-path PATH /packages/netcdf-4.0.1-gnu/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-4.0.1-gnu/lib
prepend-path NETCDF /packages/netcdf-4.0.1-gnu
prepend-path INCLUDE /packages/netcdf-4.0.1-gnu/include
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"

Network Common Data Form version 4.0.1 for intel compilers

module load netcdf/4.0.1-intel

URL: http://www.unidata.ucar.edu/software/netcdf/

Tags: 


proc ModulesHelp { } {
  puts stderr "Network Common Data Form version 4.0.1 for intel compilers"
  puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
  puts stderr "url: http://www.unidata.ucar.edu/software/netcdf/"
}
module-whatis "Network Common Data Form version 4.0.1 for intel compilers"
module load intel/11.1
prereq intel/11.1
prepend-path PATH /packages/netcdf-4.0.1/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-4.0.1/lib
prepend-path NETCDF /packages/netcdf-4.0.1
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"

Network Common Data Form version 4.0.1 for pgi compiler

module load netcdf/4.0.1-pgi

URL: http://www.unidata.ucar.edu/software/netcdf/

Tags: 


proc ModulesHelp { } {
  puts stderr "Network Common Data Form version 4.0.1 for pgi compiler"
  puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
  puts stderr "url: http://www.unidata.ucar.edu/software/netcdf/"
}
module-whatis "Network Common Data Form version 4.0.1 for pgi compiler"
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/netcdf-4.0.1-pgi/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-4.0.1-pgi/lib
prepend-path NETCDF /packages/netcdf-4.0.1-pgi
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"

Network Free Stochastic Simulator

module load nfsim/1.08 


proc ModulesHelp { } {
  puts stderr "Network Free Stochastic Simulator"
}
module-whatis "Network Free Stochastic Simulator"
prepend-path PATH /packages/NFsim-1.08/bin:/packages/NFsim-1.08/NFtools

Network Free Stochastic Simulator 1.09

module load nfsim/1.09 


proc ModulesHelp { } {
  puts stderr "Network Free Stochastic Simulator 1.09"
}
module-whatis "Network Free Stochastic Simulator 1.09"
prepend-path PATH /packages/NFsim/1.09/bin:/packages/NFsim/1.09/NFtools

Neuron Simulation Software

module load neuron/6.0.4

URL: http://www.neuron.yale.edu/neuron/

Tags: 


proc ModulesHelp { } {
  puts stderr "Neuron Simulation Software"
  puts stderr "TAGS: neural networks"
  puts stderr "URL: http://www.neuron.yale.edu/neuron/"
}
module-whatis "Neuron Simulation Software"
module load mvapich/1.0.1-gnu
prereq mvapich/1.0.1-gnu
prepend-path PATH /packages/neuron/iv/x86_64/bin/:/packages/neuron/nrn/x86_64/bin/
prepend-path LD_LIBRARY_PATH /packages/neuron/iv/x86_64/lib/:/packages/neuron/nrn/x86_64/lib/

ngCGH-0.1.2

module load ngcgh/0.1.2

Tags: 


proc ModulesHelp { } {
  puts stderr "ngCGH-0.1.2"
  puts stderr "TAGS: python"
}
module-whatis "ngCGH-0.1.2"

source $env(MODULEPATH)/.gui_warning

module load python/2.7
prereq python/2.7

numpy-1.3.0rc2

module load numpy/1.3.0rc2

Tags: 


proc ModulesHelp { } {
  puts stderr "numpy-1.3.0rc2"
  puts stderr "TAGS: python, numerical libraries"
}
module-whatis "numpy-1.3.0rc2"
module load intel/10.1
prereq intel/10.1
prepend-path PATH /packages/numpy-1.3.0rc2/bin
prepend-path LD_LIBRARY_PATH /packages/numpy-1.3.0rc2/lib64
prepend-path PYTHONPATH /packages/numpy-1.3.0rc2/lib64/python2.4/site-packages

numpy-1.5.1 compiled with Python 2.7 and Intel MKL

module load numpy/1.5.1

Tags: 


proc ModulesHelp { } {
  puts stderr "numpy-1.5.1 compiled with Python 2.7 and Intel MKL"
  puts stderr "TAGS: python, numerical libraries"
}
module-whatis "numpy-1.5.1 compiled with Python 2.7 and Intel MKL"
module load intel/12.0
prereq intel/12.0
module load python/2.7
prereq python/2.7
prepend-path PATH /packages/numpy-1.5.1/bin
prepend-path LD_LIBRARY_PATH /packages/numpy-1.5.1/lib
prepend-path PYTHONPATH /packages/numpy-1.5.1/lib/python

NWChem-5.1

module load nwchem/5.1

URL: http://www.nwchem-sw.org/index.php/Main_Page

Tags: 


proc ModulesHelp { } {
  puts stderr "NWChem-5.1"
  puts stderr "TAGS: chemistry"
  puts stderr "url: http://www.nwchem-sw.org/index.php/Main_Page"
}
module-whatis "NWChem-5.1"
module load intel/10.1
prereq intel/10.1
prepend-path PATH /packages/NWChem-5.1/bin

NWChem-6.0

module load nwchem/6.0

URL: http://www.nwchem-sw.org/index.php/Main_Page

Tags: 


proc ModulesHelp { } {
  puts stderr "NWChem-6.0"
  puts stderr "TAGS: chemistry"
  puts stderr "url: http://www.nwchem-sw.org/index.php/Main_Page"
}
module-whatis "NWChem-6.0"
source $env(MODULEPATH)/.gui_warning

exec /packages/NWChem-6.0/fix-resource.sh

module load mvapich2/1.6-intel
module load python/2.7.2
prereq mvapich2/1.6-intel
prepend-path PATH /packages/NWChem-6.0/bin

NX-Nastran-7.5.0

module load nx_nastran/7.5.0

URL: http://www.plm.automation.siemens.com/en_sg/products/nx/simulation/nastran/index.shtml

Tags: 


proc ModulesHelp { } {
  puts stderr "NX-Nastran-7.5.0"
  puts stderr "TAGS: CAD"
  puts stderr "url: http://www.plm.automation.siemens.com/en_sg/products/nx/simulation/nastran/index.shtml"
}
module-whatis "NX-Nastran-7.5.0"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/nx_nastran/application/ugii/
prepend-path PATH /packages/nx_nastran/application/nxnastran/bin/
prepend-path UGII_BASE_DIR /packages/nx_nastran/application 
prepend-path UGII_ROOT_DIR /packages/nx_nastran/application/bin/ 
prepend-path UGS_LICENSE_SERVER 28000@Pubkeyserver16.asu.edu
Return to Top

O

octave-3.2.4

module load octave/3.2.4

Tags: 


proc ModulesHelp { } {
  puts stderr "octave-3.2.4"
  puts stderr "TAGS: octave"
}
module-whatis "octave-3.2.4"

source $env(MODULEPATH)/.gui_warning

module load gnuplot/4.2.6
prereq gnuplot/4.2.6

prepend-path PATH /packages/octave-3.2.4/bin
prepend-path PATH /packages/octave-3.2.4/hdf5/bin
prepend-path LD_LIBRARY_PATH /packages/octave-3.2.4/lib/octave-3.2.4
prepend-path LD_LIBRARY_PATH /packages/octave-3.2.4/hdf5/lib64
prepend-path INCLUDE /packages/octave-3.2.4/hdf5/include
prepend-path MANPATH /packages/octave-3.2.4/share/man

octave-3.4.0

module load octave/3.4.0

Tags: 


proc ModulesHelp { } {
  puts stderr "octave-3.4.0"
  puts stderr "TAGS: octave"
}
module-whatis "octave-3.4.0"
source $env(MODULEPATH)/.gui_warning
module load gnuplot/4.2.6
prereq gnuplot/4.2.6
prepend-path PATH /packages/octave-3.4.0/bin
prepend-path PATH /packages/octave-3.4.0/hdf5/bin
prepend-path LD_LIBRARY_PATH /packages/octave-3.4.0/lib/octave-3.4.0
prepend-path LD_LIBRARY_PATH /packages/octave-3.4.0/hdf5/lib64
prepend-path INCLUDE /packages/octave-3.4.0/hdf5/include
prepend-path MANPATH /packages/octave-3.4.0/share/man

OLB-1.9.0

module load olb/1.9.0 


proc ModulesHelp { } {
  puts stderr "OLB-1.9.0"
}
module-whatis "OLB-1.9.0"
module load fftw/3.2.2-openmpi
prereq fftw/3.2.2-openmpi
prepend-path PATH /packages/olb-1.9.0/bin
prepend-path LD_LIBRARY_PATH /packages/olb-1.9.0/lib

OpenMPI 1.2.7 compiled with the GNU Compilers

module load openmpi/1.2.7-gnu

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.2.7 compiled with the GNU Compilers"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}

module-whatis "OpenMPI 1.2.7 compiled with the GNU Compilers"

conflict mvapich mvapich2 openmpi intel-mpi

module load intel/10.1
prereq intel/10.1

prepend-path PATH            /packages/gcc-openmpi-1.2.7/bin
prepend-path MANPATH         /packages/gcc-openmpi-1.2.7/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-openmpi-1.2.7/lib

OpenMPI 1.2.7 with the Intel Compilers v10

module load openmpi/1.2.7-intel

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.2.7 with the Intel Compilers v10"
  puts stderr "TAGS: mpi"
}
module-whatis "OpenMPI 1.2.7 with the Intel Compilers v10"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/10.1
prereq intel/10.1
prepend-path PATH /packages/intel-openmpi-1.2.7/bin
prepend-path MANPATH /packages/intel-openmpi-1.2.7/share/man
prepend-path LD_LIBRARY_PATH /packages/intel-openmpi-1.2.7/lib

OpenMPI 1.2.7 with the PGI compilers (FORTRAN ONLY)

module load openmpi/1.2.7-pgi

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.2.7 with the PGI compilers (FORTRAN ONLY)"
  puts stderr "TAGS: mpi"
}
module-whatis "OpenMPI 1.2.7 with the PGI compilers (FORTRAN ONLY)"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/pgi-openmpi-1.2.7/bin
prepend-path MANPATH /packages/pgi-openmpi-1.2.7/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-openmpi-1.2.7/lib

OpenMPI 1.4.2 compiled with Intel v11

module load openmpi/1.4.2-intel

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.2"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}

module-whatis "OpenMPI 1.4.2 compiled with Intel v11"

conflict mvapich mvapich2 openmpi intel-mpi

module load intel/11.1
prereq intel/11.1

prepend-path PATH            /packages/intel-openmpi-1.4.2/bin
prepend-path MANPATH         /packages/intel-openmpi-1.4.2/share/man
prepend-path LD_LIBRARY_PATH /packages/intel-openmpi-1.4.2/lib

OpenMPI 1.4.2 compiled with the GNU Compilers

module load openmpi/1.4.2-gnu

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.2 compiled with the GNU Compilers"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}

module-whatis "OpenMPI 1.4.2 compiled with the GNU Compilers"

conflict mvapich mvapich2 openmpi intel-mpi

prepend-path PATH            /packages/gcc-openmpi-1.4.2/bin
prepend-path MANPATH         /packages/gcc-openmpi-1.4.2/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-openmpi-1.4.2/lib

OpenMPI 1.4.2 with GCC Compilers and MPE2 - DEBUGGING ONLY

module load openmpi/1.4.2-gnu-debug

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.2 with GCC Compilers and MPE2 - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
}

module-whatis "OpenMPI 1.4.2 with GCC Compilers and MPE2 - DEBUGGING ONLY"

conflict mvapich mvapich2 openmpi intel-mpi

prepend-path PATH            /packages/gcc-openmpi-1.4.2-debugging/bin
prepend-path MANPATH         /packages/gcc-openmpi-1.4.2-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-openmpi-1.4.2-debugging/lib

OpenMPI 1.4.2 with the Intel Compilers v11 and MPE2 - DEBUGGING ONLY

module load openmpi/1.4.2-intel-debug

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.2 with the Intel Compilers v11 and MPE2 - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
}
module-whatis "OpenMPI 1.4.2 with the Intel Compilers v11 and MPE2 - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/11.1
prereq intel/11.1
prepend-path PATH /packages/intel-openmpi-1.4.2-debugging/bin
prepend-path MANPATH /packages/intel-openmpi-1.4.2-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/intel-openmpi-1.4.2-debugging/lib

OpenMPI 1.4.2 with the PGI Compilers (FORTRAN ONLY)

module load openmpi/1.4.2-pgi

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.2 with the PGI Compilers (FORTRAN ONLY)"
  puts stderr "TAGS: mpi"
}
module-whatis "OpenMPI 1.4.2 with the PGI Compilers (FORTRAN ONLY)"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/pgi-openmpi-1.4.2/bin
prepend-path MANPATH /packages/pgi-openmpi-1.4.2/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-openmpi-1.4.2/lib

OpenMPI 1.4.2 with the PGI Compilers (FORTRAN ONLY) - DEBUGGING ONLY

module load openmpi/1.4.2-pgi-debug

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.2 with the PGI Compilers (FORTRAN ONLY) - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
}
module-whatis "OpenMPI 1.4.2 with the PGI Compilers (FORTRAN ONLY) - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/pgi-openmpi-1.4.2-debugging/bin
prepend-path MANPATH /packages/pgi-openmpi-1.4.2-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-openmpi-1.4.2-debugging/lib

OpenMPI 1.4.3 compiled with GNU 4.1.2

module load openmpi/1.4.3-gnu

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.3 with GNU Compilers"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.3 compiled with GNU 4.1.2"
conflict mvapich mvapich2 openmpi intel-mpi
prepend-path PATH            /packages/gcc-openmpi-1.4.3/bin
prepend-path MANPATH         /packages/gcc-openmpi-1.4.3/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-openmpi-1.4.3/lib

OpenMPI 1.4.3 compiled with Intel v12

module load openmpi/1.4.3-intel

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.3 compiled with Intel v12"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}

module-whatis "OpenMPI 1.4.3 compiled with Intel v12"

conflict mvapich mvapich2 openmpi intel-mpi

module load intel/12.0
prereq intel/12.0

prepend-path PATH            /packages/intel12-openmpi-1.4.3/bin
prepend-path MANPATH         /packages/intel12-openmpi-1.4.3/share/man
prepend-path LD_LIBRARY_PATH /packages/intel12-openmpi-1.4.3/lib

OpenMPI 1.4.3 compiled with PGI 7.0 Fortran compilers

module load openmpi/1.4.3-pgi

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.3 compiled with PGI 7.0 Fortran compilers"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}

module-whatis "OpenMPI 1.4.3 compiled with PGI 7.0 Fortran compilers"

conflict mvapich mvapich2 openmpi intel-mpi

module load pgi/7.0

prepend-path PATH            /packages/pgi-openmpi-1.4.3/bin
prepend-path MANPATH         /packages/pgi-openmpi-1.4.3/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-openmpi-1.4.3/lib

OpenMPI 1.4.3 with GNU Compilers and MPE2 - DEBUGGING ONLY

module load openmpi/1.4.3-gnu-debug

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.3 with GNU Compilers and MPE2 - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.3 with GNU Compilers and MPE2 - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
prepend-path PATH            /packages/gcc-openmpi-1.4.3-debugging/bin
prepend-path MANPATH         /packages/gcc-openmpi-1.4.3-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-openmpi-1.4.3-debugging/lib

OpenMPI 1.4.3 with the Intel Compilers v12 and MPE2 - DEBUGGING ONLY

module load openmpi/1.4.3-intel-debug

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.3 with the Intel Compilers v12 and MPE2 - DEBUGGING ONLY"
  puts stderr "OpenMPI 1.4.3 compiled with Intel v12 - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}

module-whatis "OpenMPI 1.4.3 with the Intel Compilers v12 and MPE2 - DEBUGGING ONLY"

conflict mvapich mvapich2 openmpi intel-mpi

module load intel/12.0
prereq intel/12.0

prepend-path PATH            /packages/intel12-openmpi-1.4.3-debugging/bin
prepend-path MANPATH         /packages/intel12-openmpi-1.4.3-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/intel12-openmpi-1.4.3-debugging/lib

OpenMPI 1.4.3 with the PGI Compilers (FORTRAN ONLY) - DEBUGGING ONLY

module load openmpi/1.4.3-pgi-debug

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.3 with the PGI Compilers (FORTRAN ONLY) - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
}
module-whatis "OpenMPI 1.4.3 with the PGI Compilers (FORTRAN ONLY) - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/pgi-openmpi-1.4.3-debugging/bin
prepend-path MANPATH /packages/pgi-openmpi-1.4.3-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-openmpi-1.4.3-debugging/lib

OpenMPI 1.4.5 compiled with GNU 4.1.2

module load openmpi/1.4.5-gnu-4.1.2

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.5 with version 4.1.2 of the GNU compilers"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.5 compiled with GNU 4.1.2"

conflict mvapich mvapich2 openmpi intel-mpi

prepend-path PATH            /packages/openmpi/1.4.5/gcc/4.1.2/normal/bin
prepend-path MANPATH         /packages/openmpi/1.4.5/gcc/4.1.2/normal/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/gcc/4.1.2/normal/lib

OpenMPI 1.4.5 compiled with GNU 4.1.2 and MPE2 - DEBUGGING ONLY

module load openmpi/1.4.5-gnu-4.1.2-debug

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.5 with version 4.1.2 of the GNU compilers and MPE2 - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.5 compiled with GNU 4.1.2 and MPE2 - DEBUGGING ONLY"

conflict mvapich mvapich2 openmpi intel-mpi

prepend-path PATH            /packages/openmpi/1.4.5/gcc/4.1.2/debug/bin
prepend-path MANPATH         /packages/openmpi/1.4.5/gcc/4.1.2/debug/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/gcc/4.1.2/debug/lib

OpenMPI 1.4.5 compiled with GNU 4.6.3

module load openmpi/1.4.5-gnu-4.6.3

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.5 with version 4.6.3 of the GNU compilers"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.5 compiled with GNU 4.6.3"

conflict mvapich mvapich2 openmpi intel-mpi

module load gcc/4.6.3
prereq gcc/4.6.3

prepend-path PATH            /packages/openmpi/1.4.5/gcc/4.6.3/normal/bin
prepend-path MANPATH         /packages/openmpi/1.4.5/gcc/4.6.3/normal/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/gcc/4.6.3/normal/lib

OpenMPI 1.4.5 compiled with GNU 4.6.3 and MPE2 - DEBUGGING ONLY

module load openmpi/1.4.5-gnu-4.6.3-debug

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.5 with version 4.6.3 of the GNU compilers and MPE2 - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.5 compiled with GNU 4.6.3 and MPE2 - DEBUGGING ONLY"

conflict mvapich mvapich2 openmpi intel-mpi

module load gcc/4.6.3
prereq gcc/4.6.3

prepend-path PATH            /packages/openmpi/1.4.5/gcc/4.6.3/debug/bin
prepend-path MANPATH         /packages/openmpi/1.4.5/gcc/4.6.3/debug/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/gcc/4.6.3/debug/lib

OpenMPI 1.4.5 compiled with Intel v12

module load openmpi/1.4.5-intel

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.5 compiled with Intel v12"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}

module-whatis "OpenMPI 1.4.5 compiled with Intel v12"

conflict mvapich mvapich2 openmpi intel-mpi

module load intel/12.0
prereq intel/12.0

prepend-path PATH            /packages/openmpi/1.4.5/intel/12.0/normal/bin
prepend-path MANPATH         /packages/openmpi/1.4.5/intel/12.0/normal/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/intel/12.0/normal/lib

OpenMPI 1.4.5 compiled with Intel v12.1

module load openmpi/1.4.5-intel-12.1

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.5 compiled with Intel v12.1"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}

module-whatis "OpenMPI 1.4.5 compiled with Intel v12.1"

conflict mvapich mvapich2 openmpi intel-mpi

module load intel/12.1
prereq intel/12.1

prepend-path PATH            /packages/openmpi/1.4.5/intel/12.1/normal/bin
prepend-path MANPATH         /packages/openmpi/1.4.5/intel/12.1/normal/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/intel/12.1/normal/lib

OpenMPI 1.4.5 compiled with PGI 7.0 Fortran compilers

module load openmpi/1.4.5-pgi

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.5 compiled with PGI 7.0 Fortran compilers"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}

module-whatis "OpenMPI 1.4.5 compiled with PGI 7.0 Fortran compilers"

conflict mvapich mvapich2 openmpi intel-mpi

module load pgi/7.0

prepend-path PATH            /packages/openmpi/1.4.5/pgi/7.0/normal/bin
prepend-path MANPATH         /packages/openmpi/1.4.5/pgi/7.0/normal/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/pgi/7.0/normal/lib

OpenMPI 1.4.5 compiled with Solaris Studio 12.3 (NOT FOR PRODUCTION USE)

module load openmpi/1.4.5-solaris

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.5 compiled with Solaris Studio 12.3 (NOT FOR PRODUCTION USE)"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}

module-whatis "OpenMPI 1.4.5 compiled with Solaris Studio 12.3 (NOT FOR PRODUCTION USE)"

conflict mvapich mvapich2 openmpi intel-mpi

module load solarisstudio/12.3
prereq solarisstudio/12.3

prepend-path PATH            /packages/openmpi/1.4.5/solaris/12.3/normal/bin
prepend-path MANPATH         /packages/openmpi/1.4.5/solaris/12.3/normal/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/solaris/12.3/normal/lib

OpenMPI 1.4.5 with the Intel Compilers v12 and MPE2 - DEBUGGING ONLY

module load openmpi/1.4.5-intel-debug

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.5 compiled with Intel v12 and MPE2 - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}


module-whatis "OpenMPI 1.4.5 with the Intel Compilers v12 and MPE2 - DEBUGGING ONLY"

conflict mvapich mvapich2 openmpi intel-mpi

module load intel/12.0
prereq intel/12.0

prepend-path PATH            /packages/openmpi/1.4.5/intel/12.0/debug/bin
prepend-path MANPATH         /packages/openmpi/1.4.5/intel/12.0/debug/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/intel/12.0/debug/lib

OpenMPI 1.4.5 with the PGI Compilers (FORTRAN ONLY) - DEBUGGING ONLY

module load openmpi/1.4.5-pgi-debug

URL: http://www.open-mpi.org/

Tags: 


proc ModulesHelp { } {
  puts stderr "OpenMPI 1.4.5 with the PGI Compilers (FORTRAN ONLY) - DEBUGGING ONLY"
  puts stderr "TAGS: mpi"
  puts stderr "URL: http://www.open-mpi.org/"
}

module-whatis "OpenMPI 1.4.5 with the PGI Compilers (FORTRAN ONLY) - DEBUGGING ONLY"

conflict mvapich mvapich2 openmpi intel-mpi

module load pgi/7.0

prepend-path PATH            /packages/openmpi/1.4.5/pgi/7.0/debug/bin
prepend-path MANPATH         /packages/openmpi/1.4.5/pgi/7.0/debug/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/pgi/7.0/debug/lib

Oracle Solaris Studio 12.3 C, C++, Fortran Compilers for Linux

module load solarisstudio/12.3

Tags: 


proc ModulesHelp { } {
  puts stderr "Oracle Solaris Studio 12.3 C, C++, Fortran Compilers for Linux"
  puts stderr "TAGS: compilers"
}
module-whatis "Oracle Solaris Studio 12.3 C, C++, Fortran Compilers for Linux"

module load java
prereq java

prepend-path PATH /packages/solarisstudio/12.3/SolarisStudio12.3-linux-x86-bin/solarisstudio12.3/bin
prepend-path LD_LIBRARY_PATH /packages/solarisstudio/12.3/SolarisStudio12.3-linux-x86-bin/solarisstudio12.3/lib

osa-2.1

module load osa/2.1 


proc ModulesHelp { } {
  puts stderr "osa-2.1"
}
module-whatis "osa-2.1"
prepend-path PATH /packages/osa-2.1
Return to Top

P

pairoscope-0.2

module load pairoscope/0.2 


proc ModulesHelp { } {
  puts stderr "pairoscope-0.2"
}

module-whatis "pairoscope-0.2"

source $env(MODULEPATH)/.gui_warning

module load samtools/0.1.16

prepend-path PATH /packages/pairoscope/pairoscope_0.2/bin/

paml 4.4d

module load paml/4.4d

Tags: 


proc ModulesHelp { } {
  puts stderr "paml 4.4d Phylogenetic Analysis by Maximum Likelihood"
  puts stderr "TAGS: bioinformatics, phylogenetics"
}
module-whatis "paml 4.4d"
prepend-path PATH /packages/paml44/bin

paraview-3.4.0

module load paraview/3.4.0

Tags: 


proc ModulesHelp { } {
  puts stderr "paraview-3.4.0"
  puts stderr "TAGS: visualization"
}
module-whatis "paraview-3.4.0"
prepend-path PATH /packages/paraview-3.4.0/gcc/bin

pathway-tools-14.0

module load pathway-tools/14.0

URL: http://bioinformatics.ai.sri.com/ptools/

Tags: 


proc ModulesHelp { } {
  puts stderr "pathway-tools-14.0"
  puts stderr "TAGS: bioinformatics, visualization"
  puts stderr "url: http://bioinformatics.ai.sri.com/ptools/"
}
module-whatis "pathway-tools-14.0"
prepend-path PATH /packages/pathway-tools-14.0

pBWA - Parallel Burrows-Wheeler Aligner 0.5.9-r30

module load pbwa/0.5.9-r30 


proc ModulesHelp { } {
  puts stderr "pBWA 0.5.9-r30"
}

module-whatis "pBWA - Parallel Burrows-Wheeler Aligner 0.5.9-r30"

prepend-path PATH    /packages/pBWA/0.5.9-r30/bin

peakseq-1.1

module load peakseq/1.1 


proc ModulesHelp { } {
  puts stderr "peakseq-1.1"
}
module-whatis "peakseq-1.1"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/peakseq/1.1/bin

pedcheck-1.1

module load pedcheck/1.1

Tags: 


proc ModulesHelp { } {
  puts stderr "pedcheck-1.1"
  puts stderr "TAGS: bioinformatics"
}
module-whatis "pedcheck-1.1"
prepend-path PATH /packages/pedcheck-1.1

phrap-0.990329

module load phrap/0.990329 


proc ModulesHelp { } {
  puts stderr "phrap-0.990329"
}
module-whatis "phrap-0.990329"
prepend-path PATH /packages/phrap-0.990329

Picard 1.46

module load picard/1.46

Tags: 


proc ModulesHelp { } {
  puts stderr "Picard 1.46"
  puts stderr "TAGS: bioinformatics, java"
  puts stderr "http://picard.sourceforge.net/"
}

module-whatis "Picard 1.46"

source $env(MODULEPATH)/.gui_warning

module load java
prereq java

prepend-path CLASSPATH /packages/picard/picard-tools-1.46/

Picard 1.64

module load picard/1.64

Tags: 


proc ModulesHelp { } {
  puts stderr "Picard 1.64"
  puts stderr "TAGS: bioinformatics, java"
  puts stderr "http://picard.sourceforge.net/"
}

module-whatis "Picard 1.64"

source $env(MODULEPATH)/.gui_warning

module load java
prereq java

prepend-path CLASSPATH /packages/picard/picard-tools-1.64/

plapack-3.2

module load plapack/3.2

URL: http://www.cs.utexas.edu/~plapack/

Tags: 


proc ModulesHelp { } {
  puts stderr "plapack-3.2"
  puts stderr "TAGS: numerical libraries"
  puts stderr "URL: http://www.cs.utexas.edu/~plapack/"
}

module-whatis "plapack-3.2"

prepend-path LD_LIBRARY_PATH /packages/PLAPACK-3.2

plink-1.04

module load plink/1.04

URL: http://pngu.mgh.harvard.edu/~purcell/plink/

Tags: 


proc ModulesHelp { } {
  puts stderr "plink-1.04"
  puts stderr "TAGS: bioinformatics, genomics"
  puts stderr "url: http://pngu.mgh.harvard.edu/~purcell/plink/"
}
module-whatis "plink-1.04"
prepend-path PATH /packages/plink-1.04

plink-1.07

module load plink/1.07

URL: http://pngu.mgh.harvard.edu/~purcell/plink/

Tags: 


proc ModulesHelp { } {
  puts stderr "plink-1.07"
  puts stderr "TAGS: bioinformatics, genomics"
  puts stderr "url: http://pngu.mgh.harvard.edu/~purcell/plink/"
}
module-whatis "plink-1.07"
prepend-path PATH /packages/plink-1.07

Portland Group 7.0 Fortran Compiler

module load pgi/7.0 


proc ModulesHelp { } {
  puts stderr "Portland Group 7.0 Fortran Compiler"
}

module-whatis "Portland Group 7.0 Fortran Compiler"

prepend-path PATH /packages/pgi/linux86-64/7.0-4/bin
prepend-path LD_LIBRARY_PATH /packages/pgi/linux86-64/7.0-4/lib:/packages/pgi/linux86-64/7.0-4/libso
prepend-path LM_LICENSE_FILE /packages/pgi/license.dat

pymvpa-0.4.5

module load pymvpa/0.4.5

Tags: 


proc ModulesHelp { } {
  puts stderr "pymvpa-0.4.5"
  puts stderr "TAGS: python, numerical libraries"
}
module-whatis "pymvpa-0.4.5"
module load numpy/1.3.0rc2 
prereq numpy/1.3.0rc2 
prepend-path PATH /packages/pymvpa-0.4.5/bin
prepend-path LD_LIBRARY_PATH /packages/pymvpa-0.4.5/lib64
prepend-path PYTHONPATH /packages/pymvpa-0.4.5/lib64/python

python-2.6.7

module load python/2.6.7

Tags: 


proc ModulesHelp { } {
  puts stderr "python-2.6.7"
  puts stderr "TAGS: python"
}

module-whatis "python-2.6.7"


prepend-path PATH /packages/python/python-2.6.7/bin
prepend-path LD_LIBRARY_PATH /packages/python/python-2.6.7/lib
prepend-path MANPATH /packages/python/python-2.6.7/share/man/
prepend-path PYTHONPATH /packages/python/python-2.6.7

python-2.7

module load python/2.7

Tags: 


proc ModulesHelp { } {
  puts stderr "python-2.7"
  puts stderr "TAGS: python"
}
module-whatis "python-2.7"
prepend-path PATH /packages/python-2.7/bin
prepend-path LD_LIBRARY_PATH /packages/python-2.7/lib
prepend-path MANPATH /packages/python-2.7/share/man
prepend-path PYTHONPATH /packages/python-2.7

python-2.7.2

module load python/2.7.2

Tags: 


proc ModulesHelp { } {
  puts stderr "python-2.7.2"
  puts stderr "TAGS: python"
}

module-whatis "python-2.7.2"


prepend-path PATH /packages/python/python-2.7.2/bin
prepend-path LD_LIBRARY_PATH /packages/python/python-2.7.2/lib
prepend-path MANPATH /packages/python/python-2.7.2/share/man/
prepend-path PYTHONPATH /packages/python/python-2.7.2

python-3.1.2

module load python/3.1.2

Tags: 


proc ModulesHelp { } {
  puts stderr "python-3.1.2"
  puts stderr "TAGS: python"
}
module-whatis "python-3.1.2"
prepend-path PATH /packages/python-3.1.2/bin
prepend-path LD_LIBRARY_PATH /packages/python-3.1.2/lib
prepend-path MANPATH /packages/python-3.1.2/share/man
prepend-path PYTHONPATH /packages/python-3.1.2

python-3.2

module load python/3.2

Tags: 


proc ModulesHelp { } {
  puts stderr "python-3.2"
  puts stderr "TAGS: python"
}

module-whatis "python-3.2"


prepend-path PATH /packages/python/python-3.2/bin
prepend-path LD_LIBRARY_PATH /packages/python/python-3.2/lib
prepend-path MANPATH /packages/python/python-3.2/share/man/
prepend-path PYTHONPATH /packages/python/python-3.2
Return to Top

Q

qd-2.3.11

module load qd/2.3.11 


proc ModulesHelp { } {
  puts stderr "qd-2.3.11"
}
module-whatis "qd-2.3.11"
module load openmpi/1.2.7-intel
prereq openmpi/1.2.7-intel
prepend-path PATH /packages/qd-2.3.11/bin
prepend-path LD_LIBRARY_PATH /packages/qd-2.3.11/lib
prepend-path LD_LIBRARY_PATH /packages/qd-2.3.11/lib/qd

qd-2.3.11 compiled with intel/12.0

module load qd/2.3.11-intel-12.0 


proc ModulesHelp { } {
  puts stderr "qd-2.3.11 compiled with intel/12.0"
}
module-whatis "qd-2.3.11 compiled with intel/12.0"
module load intel/12.0
prereq intel/12.0
prepend-path PATH /packages/qd-2.3.11-intel-12.0/bin
prepend-path LD_LIBRARY_PATH /packages/qd-2.3.11-intel-12.0/lib
prepend-path LD_LIBRARY_PATH /packages/qd-2.3.11-intel-12.0/lib/qd
Return to Top

R

R-2.11.1

module load r/2.11.1

Tags: 


proc ModulesHelp { } {
  puts stderr "R-2.11.1"
  puts stderr "TAGS: statistics"
}

module-whatis "R-2.11.1"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/R-2.11.1/bin
prepend-path LD_LIBRARY_PATH /packages/R-2.11.1/lib64/R/lib
prepend-path MANPATH /packages/R-2.11.1/share/man

R-2.13.0

module load r/2.13.0

Tags: 


proc ModulesHelp { } {
  puts stderr "R-2.13.0"
  puts stderr "TAGS: statistics"
}
module-whatis "R-2.13.0"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/R/R-2.13.0/bin
prepend-path LD_LIBRARY_PATH /packages/R/R-2.13.0/lib64/R/lib
prepend-path MANPATH /packages/R/R-2.13.0/share/man

R-2.4.1

module load r/2.4.1

Tags: 


proc ModulesHelp { } {
  puts stderr "R-2.4.1"
  puts stderr "TAGS: statistics"
}
module-whatis "R-2.4.1"
prepend-path PATH /packages/R-2.4.1/bin
prepend-path LD_LIBRARY_PATH /packages/R-2.4.1/lib64/R/lib
prepend-path MANPATH /packages/R-2.4.1/man

R-2.7.2

module load r/2.7.2

Tags: 


proc ModulesHelp { } {
  puts stderr "R-2.7.2"
  puts stderr "TAGS: statistics"
}
module-whatis "R-2.7.2"
prepend-path PATH /packages/R-2.7.2/bin
prepend-path LD_LIBRARY_PATH /packages/R-2.7.2/lib64/R/lib
prepend-path MANPATH /packages/R-2.7.2/share/man

Ray-0.1.0

module load ray/0.1.0 


proc ModulesHelp { } {
  puts stderr "Ray-0.1.0"
}
module-whatis "Ray-0.1.0"
module load openmpi/1.2.7-intel
prereq openmpi/1.2.7-intel
prepend-path PATH /packages/Ray-0.1.0

Ray-1.2.0

module load ray/1.2.0 


proc ModulesHelp { } {
  puts stderr "Ray-1.2.0"
}
module-whatis "Ray-1.2.0"
module load openmpi/1.4.2-intel
prereq openmpi/1.4.2-intel
prepend-path PATH /packages/Ray-1.2.0/bin

rdxplorer 3.2

module load rdxplorer/3.2 


proc ModulesHelp { } {
  puts stderr "rdxplorer 3.2"
}
module-whatis "rdxplorer 3.2"

source $env(MODULEPATH)/.gui_warning

module load python/2.6.7
prereq python/2.6.7

module load r/2.13.0
prereq r/2.13.0

module load samtools/0.1.16
prereq samtools/0.1.16

prepend-path PATH /packages/rdxplorer/rdxplorer_3.2/

repast-2.0.0 (using eclipse-3.6.2)

module load repast/2.0.0 


proc ModulesHelp { } {
  puts stderr "repast-2.0.0 (using eclipse-3.6.2)"
}

module-whatis "repast-2.0.0 (using eclipse-3.6.2)"

source $env(MODULEPATH)/.gui_warning

module load java/1.6.0_25
prereq java/1.6.0_25

prepend-path PATH /packages/repast/eclipse-3.6.2

Rosetta-3.1

module load rosetta/3.1 


proc ModulesHelp { } {
  puts stderr "Rosetta-3.1"
}
module-whatis "Rosetta-3.1"
prepend-path PATH /packages/Rosetta-3.1
prepend-path LD_LIBRARY_PATH /packages/Rosetta-3.1

Rosetta-3.2.1

module load rosetta/3.2.1

Tags: 


proc ModulesHelp { } {
  puts stderr "Rosetta-3.2.1"
  puts stderr "TAGS: bioinformatics"
}
module-whatis "Rosetta-3.2.1"
prepend-path PATH /packages/rosetta3.2.1/rosetta_source/bin
prepend-path LD_LIBRARY_PATH /packages/rosetta-3.2.1/rosetta_source/lib

Rosetta-3.3 (MPI Enabled)

module load rosetta/3.3

Tags: 


proc ModulesHelp { } {
  puts stderr "Rosetta-3.3 (MPI Enabled)"
  puts stderr "TAGS: bioinformatics"
}
module-whatis "Rosetta-3.3 (MPI Enabled)"

source $env(MODULEPATH)/.gui_warning

module load gcc/4.4.4
prereq gcc/4.4.4

module load openmpi/1.4.3-gnu
prereq openmpi/1.4.3-gnu

prepend-path PATH /packages/rosetta/rosetta_3.3/rosetta_source/bin
prepend-path LD_LIBRARY_PATH /packages/rosetta/rosetta_3.3/rosetta_source/lib

RSEQtools 0.6

module load rseqtools/0.6 


proc ModulesHelp { } {
  puts stderr "RSEQtools 0.6"
}
module-whatis "RSEQtools 0.6"

source $env(MODULEPATH)/.gui_warning

module load gsl/1.12
prereq gsl/1.12

prepend-path LD_LIBRARY_PATH /packages/RSEQtools/RSEQtools-0.6/bios/lib
prepend-path PATH /packages/RSEQtools/RSEQtools-0.6/mrf
prepend-path INCLUDE /packages/RSEQtools/RSEQtools-0.6/bios

Ruby Version Manager with 1.8.7 and 1.9.2

module load ruby/rvm

Tags: 


proc ModulesHelp { } {
puts stderr {Ruby Version Manager with 1.8.7 and 1.9.2
TAGS: ruby

To switch between different versions of ruby, run "rvm 1.8.7" or "rvm 1.9.2"
}
}
module-whatis "Ruby Version Manager with 1.8.7 and 1.9.2"
setenv rvm_path /packages/rvm/rvm
setenv rvm_prefix /packages/rvm/
setenv rvm_ruby_string "ruby-1.8.7-p334"
setenv rvm_selfcontained "0"
set-alias rvm rvm
puts stdout {rvm_path=/packages/rvm/rvm rvm_prefix=/packages/rvm/ rvm_ruby_string="ruby-1.8.7-p334" rvm_selfcontained="0" source /packages/rvm/lib/rvm ; }

RuleBender-alpha 1.1.415

module load rulebender-alpha/1.1.415 


proc ModulesHelp { } {
  puts stderr "RuleBender-alpha 1.1.415"
}
module-whatis "RuleBender-alpha 1.1.415"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/MatlabR2011a/bin

module load java/1.6.0_26
prereq java/1.6.0_26

prepend-path PATH /packages/RuleBender/alpha
prepend-path PATH /packages/RuleBender/alpha/BioNetGen-2.1.7/bin
prepend-path LD_LIBRARY_PATH /packages/RuleBender/alpha/BioNetGen-2.1.7/Network2/sundials/lib

prepend-path CLASSPATH /packages/RuleBender/alpha
Return to Top

S

samtools-0.1.10

module load samtools/0.1.10 


proc ModulesHelp { } {
  puts stderr "samtools-0.1.10"
}
module-whatis "samtools-0.1.10"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/samtools-0.1.10
prepend-path PATH /packages/samtools-0.1.10/bcftools
prepend-path PATH /packages/samtools-0.1.10/misc

samtools-0.1.12a

module load samtools/0.1.12a 


proc ModulesHelp { } {
  puts stderr "samtools-0.1.12a"
}
module-whatis "samtools-0.1.12a"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/samtools-0.1.12a

samtools-0.1.14

module load samtools/0.1.14 


proc ModulesHelp { } {
  puts stderr "samtools-0.1.14"
}
module-whatis "samtools-0.1.14"

source $env(MODULEPATH)/.gui_warning

prepend-path INCLUDE /packages/samtools-0.1.14
prepend-path LD_LIBRARY_PATH /packages/samtools-0.1.14
prepend-path PATH /packages/samtools-0.1.14
prepend-path PATH /packages/samtools-0.1.14/bcftools
prepend-path PATH /packages/samtools-0.1.14/misc

samtools-0.1.16

module load samtools/0.1.16 


proc ModulesHelp { } {
  puts stderr "samtools-0.1.16"
}
module-whatis "samtools-0.1.16"

source $env(MODULEPATH)/.gui_warning

prepend-path INCLUDE /packages/samtools/samtools-0.1.16
prepend-path LD_LIBRARY_PATH /packages/samtools/samtools-0.1.16
prepend-path PATH /packages/samtools/samtools-0.1.16
prepend-path PATH /packages/samtools/samtools-0.1.16/bcftools
prepend-path PATH /packages/samtools/samtools-0.1.16/misc

samtools-0.1.3

module load samtools/0.1.3 


proc ModulesHelp { } {
  puts stderr "samtools-0.1.3"
}
module-whatis "samtools-0.1.3"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/samtools-0.1.3

samtools-0.1.6

module load samtools/0.1.6 


proc ModulesHelp { } {
  puts stderr "samtools-0.1.6"
}
module-whatis "samtools-0.1.6"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/samtools-0.1.6:/packages/samtools-0.1.6/misc

samtools-0.1.7

module load samtools/0.1.7 


proc ModulesHelp { } {
  puts stderr "samtools-0.1.7"
}
module-whatis "samtools-0.1.7"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/samtools-0.1.7

samtools-0.1.9

module load samtools/0.1.9 


proc ModulesHelp { } {
  puts stderr "samtools-0.1.9"
}
module-whatis "samtools-0.1.9"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/samtools-0.1.9/bin
prepend-path LD_LIBRARY_PATH /packages/samtools-0.1.9/lib
prepend-path CFLAGS "-I/packages/samtools-0.1.9/include"
prepend-path MANPATH /packages/samtools-0.1.9/share/man

SAS 9.2

module load sas/9.2 


proc ModulesHelp { } {
  puts stderr "SAS 9.2"
}

module-whatis "SAS 9.2"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH    /packages/sas/sas-9.2/SASFoundation/9.2

SAS 9.3

module load sas/9.3 


proc ModulesHelp { } {
  puts stderr "SAS 9.3"
}

module-whatis "SAS 9.3"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH    /packages/sas/sas-9.3/SASFoundation/9.3

Scilab 5.3.3

module load scilab/5.3.3

Tags: 


proc ModulesHelp { } {
  puts stderr "Scilab 5.3.3"
  puts stderr "TAGS: scilab"
}
module-whatis "Scilab 5.3.3"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/scilab/scilab-5.3.3/bin
prepend-path LD_LIBRARY_PATH :/packages/scilab/scilab-5.3.3/lib

scipy-0.10.0 svn revision 7012 built with numpy-1.5.1

module load scipy/0.10.0-r7012

Tags: 


proc ModulesHelp { } {
  puts stderr "scipy-0.10.0 svn revision 7012 built with numpy-1.5.1"
  puts stderr "TAGS: scientific libraries, python"
}
module-whatis "scipy-0.10.0 svn revision 7012 built with numpy-1.5.1"
module load numpy/1.5.1
prereq numpy/1.5.1
prepend-path LD_LIBRARY_PATH /packages/scipy-0.10.0.dev7012/lib
prepend-path PYTHONPATH /packages/scipy-0.10.0.dev7012/lib/python

scipy-0.7.1

module load scipy/0.7.1

Tags: 


proc ModulesHelp { } {
  puts stderr "scipy-0.7.1"
  puts stderr "TAGS: scientific libraries, python"
}
module-whatis "scipy-0.7.1"
module load intel/10.1
prereq intel/10.1
prepend-path PATH /packages/scipy-0.7.1/bin
prepend-path LD_LIBRARY_PATH /packages/scipy-0.7.1/lib64
prepend-path PYTHONPATH /packages/scipy-0.7.1/lib64/python2.4/site-packages

Silvaco EE Software Suite

module load silvaco/2007_03

Tags: 


proc ModulesHelp { } {
  puts stderr "Silvaco EE Software Suite"
  puts stderr "TAGS: circuit simulation, spice"
}
module-whatis "Silvaco EE Software Suite"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/silvaco/bin

prepend-path SFLM_SERVERS "enlicense7.eas.asu.edu"

Silvaco EE Software Suite 2011

module load silvaco/2011

Tags: 


proc ModulesHelp { } {
  puts stderr "Silvaco EE Software Suite 2011"
  puts stderr "TAGS: circuit simulation, spice"
}
module-whatis "Silvaco EE Software Suite 2011"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/silvaco-2011/bin

prepend-path SFLM_SERVERS "enlicense7.eas.asu.edu"

SOAPdenovo-127

module load soapdenovo/127

URL: http://soap.genomics.org.cn/soapdenovo.html


proc ModulesHelp { } {
  puts stderr "SOAPdenovo-127"
  puts stderr "URL:  http://soap.genomics.org.cn/soapdenovo.html"
}
module-whatis "SOAPdenovo-127"
prepend-path PATH /packages/SOAPdenovo/127

SomaticCall-36892 - Finds single base differences between matched tumor and normal cell sequences

module load somaticcall/36892

Tags: 


proc ModulesHelp { } {
  puts stderr "SomaticCall-36892 - Finds single base differences between matched tumor and normal cell sequences"
  puts stderr "TAGS: sequencing"
}

module-whatis "SomaticCall-36892 - Finds single base differences between matched tumor and normal cell sequences"

source $env(MODULEPATH)/.gui_warning

module load samtools/0.1.14
prereq samtools/0.1.14

module load boost/1.43.0
prereq boost/1.43.0

module load gmp/5.0.1
prereq gmp/5.0.1

prepend-path PATH    /packages/SomaticCall/SomaticCall-36892/bin

SPRNG 4 with gcc-openmpi-1.2.7

module load sprng/4.0

URL: http://sprng.cs.fsu.edu/

Tags: 


proc ModulesHelp { } {
  puts stderr "SPRNG 4 with gcc-openmpi-1.2.7"
  puts stderr "TAGS: pseudorandom, numerical libraries"
  puts stderr "URL: http://sprng.cs.fsu.edu/"
}
module-whatis "SPRNG 4 with gcc-openmpi-1.2.7"
module load openmpi/1.2.7-gnu
prereq openmpi/1.2.7-gnu
prepend-path PATH /packages/sprng/bin
prepend-path LD_LIBRARY_PATH /packages/sprng/lib

SQLite 3.7.6.2

module load sqlite/3.7.6.2 


proc ModulesHelp { } {
  puts stderr {SQLite 3.7.6.2
}
}

module-whatis "SQLite 3.7.6.2"

prepend-path PATH            /packages/sqlite-3.7.6.2/bin
prepend-path LD_LIBRARY_PATH /packages/sqlite-3.7.6.2/lib
prepend-path MANPATH         /packages/sqlite-3.7.6.2/share/man

Star-P 2.6.2 from ISC

module load starp/2.6.2

Tags: 


proc ModulesHelp { } {
  puts stderr "Star-P 2.6.2 from ISC"
  puts stderr "TAGS: matlab, parallelization libraries"
}
module-whatis "Star-P 2.6.2 from ISC"
prepend-path PATH /packages/starp/2.6.2/bin

STATA 11.1 (Access Restricted)

module load stata/11.1

Tags: 


proc ModulesHelp { } {
  puts stderr "STATA-11.1 (Access Restricted)"
  puts stderr "TAGS: stata"
}
module-whatis "STATA 11.1 (Access Restricted)"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/stata-11

STATA 12

module load stata/12

Tags: 


proc ModulesHelp { } {
  puts stderr "STATA-12"
  puts stderr "TAGS: stata"
}
module-whatis "STATA 12"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/stata-12

structure-2.3.1

module load structure/2.3.1 


proc ModulesHelp { } {
  puts stderr "structure-2.3.1"
}
module-whatis "structure-2.3.1"
prepend-path PATH /packages/structure-2.3.1

svdetect-0.7f - A tool to detect genomic structural variations from paired-end and mate-pair sequencing data

module load svdetect/0.7f 


proc ModulesHelp { } {
  puts stderr "svdetect-0.7f - A tool to detect genomic structural variations from paired-end and mate-pair sequencing data"
}
module-whatis "svdetect-0.7f - A tool to detect genomic structural variations from paired-end and mate-pair sequencing data"
prepend-path PATH /packages/svdetect-0.7f/bin
prepend-path LD_LIBRARY_PATH /packages/svdetect-0.7f/LIB

Synopsys HSPICE B-2008.09

module load hspice/b-2008.09

Tags: 


proc ModulesHelp { } {
  puts stderr "Synopsys HSPICE B-2008.09"
  puts stderr "TAGS: circuit simulation, spice"
}
module-whatis "Synopsys HSPICE B-2008.09"
prepend-path PATH /packages/synopsys/hspice-B-2008.09/hspice/linux
prepend-path SNPSLMD_LICENSE_FILE "27000@enlicense6.eas.asu.edu"

Synopsys HSPICE C-2009.09-SP1

module load hspice/c-2009.09-sp1

Tags: 


proc ModulesHelp { } {
  puts stderr "Synopsys HSPICE C-2009.09-SP1"
  puts stderr "TAGS: circuit simulation, spice"
}
module-whatis "Synopsys HSPICE C-2009.09-SP1"
prepend-path PATH /packages/synopsys/C-2009.09-SP1/hspice/bin
prepend-path HSPICE_64 "1"
prepend-path SNPSLMD_LICENSE_FILE "27000@enlicense6.eas.asu.edu"

Synopsys HSPICE X-2005.09-SP1

module load hspice/x-2005.09-sp1

Tags: 


proc ModulesHelp { } {
  puts stderr "Synopsys HSPICE X-2005.09-SP1"
  puts stderr "TAGS: circuit simulation, spice"
}
module-whatis "Synopsys HSPICE X-2005.09-SP1"
prepend-path PATH /packages/synopsys/hspice/linux
prepend-path SNPSLMD_LICENSE_FILE "27000@enlicense6.eas.asu.edu"

Synopsys NanoSim Version B-2008.09

module load nanosim/b-2008.09

URL: http://www.synopsys.com/Tools/Verification/AMSVerification/CircuitSimulation/Pages/NanoSim.aspx

Tags: 


proc ModulesHelp { } {
  puts stderr "Synopsys NanoSim Version B-2008.09"
  puts stderr "TAGS: circuit simulation"
  puts stderr "url: http://www.synopsys.com/Tools/Verification/AMSVerification/CircuitSimulation/Pages/NanoSim.aspx"
}
module-whatis "Synopsys NanoSim Version B-2008.09"
prepend-path PATH /packages/synopsys/nanosim/linux/ns/bin
prepend-path SNPSLMD_LICENSE_FILE "27000@enlicense6.eas.asu.edu"

Synopsys Sentaurus tcad A-2008.09

module load tcad/a-2008.09 


proc ModulesHelp { } {
  puts stderr "Synopsys Sentaurus tcad A-2008.09"
}
module-whatis "Synopsys Sentaurus tcad A-2008.09"
prepend-path PATH /packages/synopsys/Sentaurus/bin
prepend-path SNPSLMD_LICENSE_FILE "27000@enlicense6.eas.asu.edu"
prepend-path STROOT /packages/synopsys/Sentaurus

Synopsys Sentaurus tcad A-2011.09

module load tcad/a-2011-09 


proc ModulesHelp { } {
  puts stderr "Synopsys Sentaurus tcad A-2011.09"
}
module-whatis "Synopsys Sentaurus tcad A-2011.09"
prepend-path PATH /packages/tcad/bin
prepend-path SNPSLMD_LICENSE_FILE "27000@enlicense6.eas.asu.edu"
prepend-path STROOT /packages/tcad
Return to Top

T

tophat-1.0.14

module load tophat/1.0.14 


proc ModulesHelp { } {
  puts stderr "tophat-1.0.14"
}
module-whatis "tophat-1.0.14"
prepend-path PATH /packages/tophat-1.0.14

tophat-1.2.0 (Beta Version)

module load tophat/1.2.0 


proc ModulesHelp { } {
  puts stderr "tophat-1.2.0 (Beta Version)"
}
module-whatis "tophat-1.2.0 (Beta Version)"
prepend-path PATH /packages/tophat-1.2.0

tophat-1.3.0 (Beta Version)

module load tophat/1.3.0 


proc ModulesHelp { } {
  puts stderr "tophat-1.3.0 (Beta Version)"
}
module-whatis "tophat-1.3.0 (Beta Version)"
prepend-path PATH /packages/tophat/tophat-1.3.0/bin

tophat-1.4.0

module load tophat/1.4.0 


proc ModulesHelp { } {
  puts stderr "tophat-1.4.0"
}
module-whatis "tophat-1.4.0"
prepend-path PATH /packages/tophat-1.4.0

trans-ABySS v. 1.2

module load trans-abyss/1.2

URL: http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss

Tags: 


proc ModulesHelp { } {
  puts stderr "trans-ABySS v. 1.2"
  puts stderr "TAGS: bioinformatics"
  puts stderr "URL: http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss"
}

module-whatis "trans-ABySS v. 1.2"

source $env(MODULEPATH)/.gui_warning

prepend-path PYTHONPATH /home/user/trans-ABySS
prepend-path PERL5LIB /home/user/trans-ABySS/wrappers

tRIBS Distributed Hydrologic Model Parallel

module load tribs/3.0-parallel

URL: http://vivoni.asu.edu/tribs.html


proc ModulesHelp { } {
  puts stderr "tRIBS Distributed Hydrologic Model Parallel"
  puts stderr "URL: http://vivoni.asu.edu/tribs.html"
}
module-whatis "tRIBS Distributed Hydrologic Model Parallel"
module load openmpi/1.2.7-gnu
prereq openmpi/1.2.7-gnu
prepend-path PATH /packages/tribs

tRIBS Distributed Hydrologic Model Serial

module load tribs/3.0

URL: http://vivoni.asu.edu/tribs.html


proc ModulesHelp { } {
  puts stderr "tRIBS Distributed Hydrologic Model Serial"
  puts stderr "URL: http://vivoni.asu.edu/tribs.html"
}
module-whatis "tRIBS Distributed Hydrologic Model Serial"
prepend-path PATH /packages/tribs

trinity 5-19-2011

module load trinity/5192011

URL: http://TrinityRNASeq.sourceforge.net

Tags: 


proc ModulesHelp { } {
  puts stderr "trinity 5-19-2011"
  puts stderr "TAGS: bioinformatics"
  puts stderr "URL: http://TrinityRNASeq.sourceforge.net"
}

module-whatis "trinity 5-19-2011"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/trinityrna-seq

trinity 8-20-2011

module load trinity/8202011

URL: http://TrinityRNASeq.sourceforge.net

Tags: 


proc ModulesHelp { } {
  puts stderr "trinity 8-20-2011"
  puts stderr "TAGS: bioinformatics"
  puts stderr "URL: http://TrinityRNASeq.sourceforge.net"
}

module-whatis "trinity 8-20-2011"

source $env(MODULEPATH)/.gui_warning

prepend-path PATH /packages/trinityrnaseq_r2011-08-20
Return to Top

V

Valgrind 3.5.0

module load valgrind/3.5.0

URL: http://www.valgrind.org

Tags: 


proc ModulesHelp { } {
  puts stderr "Valgrind 3.5.0"
  puts stderr "TAGS: debuggers"
  puts stderr "URL: http://www.valgrind.org"
}
module-whatis "Valgrind 3.5.0"
prepend-path PATH /packages/valgrind/bin

VCFtools-0.1.3.1

module load vcftools/0.1.3.1 


proc ModulesHelp { } {
  puts stderr "VCFtools-0.1.3.1"
}
module-whatis "VCFtools-0.1.3.1"
prepend-path PATH /packages/VCFtools-0.1.3.1/bin
prepend-path PERL5LIB /packages/VCFtools-0.1.3.1/lib

velvet-1.0.01

module load velvet/1.0.01

Tags: 


proc ModulesHelp { } {
  puts stderr "velvet-1.0.01"
  puts stderr "TAGS: bioinformatics, phylogenetics"
}
module-whatis "velvet-1.0.01"
prepend-path PATH /packages/velvet-1.0.01

vmd-1.8.7

module load vmd/1.8.7

Tags: 


proc ModulesHelp { } {
  puts stderr "vmd-1.8.7"
  puts stderr "TAGS: molecular dynamics, visualization"
}
module-whatis "vmd-1.8.7"
prepend-path PATH /packages/vmd-1.8.7/bin
prepend-path LD_LIBRARY_PATH /packages/vmd-1.8.7/lib

vtk-5.6.1

module load vtk/5.6.1

Tags: 


proc ModulesHelp { } {
  puts stderr "vtk-5.6.1"
  puts stderr "TAGS: visualization"
}
module-whatis "vtk-5.6.1"
prepend-path PATH /packages/vtk-5.6.1/bin
prepend-path LD_LIBRARY_PATH /packages/vtk/5.6.1/lib/vtk-5.6