module load cap/3
Tags:
proc ModulesHelp { } {
puts stderr "cap3"
puts stderr "TAGS: bioinformatics, "
}
module-whatis "cap3"
prepend-path PATH /packages/cap3
module load aermod/11103
URL: http://www.epa.gov/ttn/scram/dispersion_prefrec.htm
Tags:
proc ModulesHelp { } {
puts stderr "AERMOD v. 11103"
puts stderr "TAGS: atmospheric modeling"
puts stderr "URL: http://www.epa.gov/ttn/scram/dispersion_prefrec.htm"
}
module-whatis "AERMOD v. 11103"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/aermod/bin
module load abyss/1.3.0
URL: http://www.bcgsc.ca/platform/bioinfo/software/abyss
Tags:
proc ModulesHelp { } {
puts stderr "ABYSS compiled with openmpi/1.4.3-gnu"
puts stderr "TAGS: bioinformatics"
puts stderr "URL: http://www.bcgsc.ca/platform/bioinfo/software/abyss"
}
module-whatis "ABYSS 1.3.0 "
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/abyss-1.3.0/bin
module load abyss/1.2.7
URL: http://www.bcgsc.ca/platform/bioinfo/software/abyss
Tags:
proc ModulesHelp { } {
puts stderr "ABYSS compiled with openmpi/1.4.3-gnu"
puts stderr "TAGS: bioinformatics"
puts stderr "URL: http://www.bcgsc.ca/platform/bioinfo/software/abyss"
}
module-whatis "ABYSS compiled with openmpi/1.4.3-gnu"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/abyss-1.2.7/bin
prepend-path PATH /packages/abyss-1.2.7/ABYSS
module load bioperl/1.6.1
Tags:
proc ModulesHelp { } {
puts stderr "BioPerl-1.6.1"
puts stderr "TAGS: bioinformatics, genomics"
puts stderr "URL: http://www.bioperl.org/"
}
module-whatis "BioPerl-1.6.1"
source $env(MODULEPATH)/.gui_warning
prepend-path PERL5LIB /packages/BioPerl-1.6.1/lib/perl5
prepend-path PATH /packages/BioPerl-1.6.1/bin
module load biopython/1.53
URL: http://biopython.org/wiki/Biopython
Tags:
proc ModulesHelp { } {
puts stderr "BioPython 1.53"
puts stderr "TAGS: bioinformatics, genomics"
puts stderr "URL: http://biopython.org/wiki/Biopython"
}
module-whatis "BioPython 1.53"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/biopython-1.53/lib64/python2.4/site-packages/Bio
prepend-path PYTHONPATH /packages/biopython-1.53/lib64/python2.4/site-packages
module load cap/3
Tags:
proc ModulesHelp { } {
puts stderr "cap3"
puts stderr "TAGS: bioinformatics, "
}
module-whatis "cap3"
prepend-path PATH /packages/cap3
module load cnv-seq/0.2-7
Tags:
proc ModulesHelp { } {
puts stderr "CNV-seq-0.2-7"
puts stderr "TAGS: bioinformatics, phylogenetics"
}
module-whatis "CNV-seq-0.2-7"
module load r/2.11.1
prereq r/2.11.1
prepend-path PATH /packages/R-2.11.1/cnv-seq
module load mosaik/2.1.33
URL: http://code.google.com/p/mosaik-aligner/
Tags:
proc ModulesHelp { } {
puts stderr "mosaik-2.1.33"
puts stderr "TAGS: bioinformatics, genomics"
puts stderr "url: http://code.google.com/p/mosaik-aligner/"
}
module-whatis "mosaik-2.1.33"
prepend-path PATH /packages/mosaik-2.1.33
module load mpiblast/1.5.0
Tags:
proc ModulesHelp { } {
puts stderr "mpiblast-1.5.0"
puts stderr "TAGS: mpi, bioinformatics"
}
module-whatis "mpiblast-1.5.0"
module load mvapich/1.0.1-intel
prereq mvapich/1.0.1-intel
prepend-path PATH /packages/mpiblast-1.5.0/bin
module load mrbayes/3.1.2
Tags:
proc ModulesHelp { } {
puts stderr "mrbayes-3.1.2 serial and parallel w/gcc-mvapich-1.0.1"
puts stderr "TAGS: bioinformatics, phylogenetics"
}
module-whatis "mrbayes-3.1.2 serial and parallel w/gcc-mvapich-1.0.1"
module load mvapich/1.0.1-gnu
prereq mvapich/1.0.1-gnu
prepend-path PATH /packages/mrbayes-3.1.2/bin
module load mummer/3.20
URL: http://mummer.sourceforge.net/
Tags:
proc ModulesHelp { } {
puts stderr "MUMmer-3.20"
puts stderr "TAGS: bioinformatics, sequencing"
puts stderr "url: http://mummer.sourceforge.net/"
}
module-whatis "MUMmer-3.20"
prepend-path PATH /packages/MUMmer-320
module load mummer/3.21
URL: http://mummer.sourceforge.net/
Tags:
proc ModulesHelp { } {
puts stderr "MUMmer-3.21"
puts stderr "TAGS: bioinformatics, sequencing"
puts stderr "url: http://mummer.sourceforge.net/"
}
module-whatis "MUMmer-3.21"
prepend-path PATH /packages/MUMmer-3.21:/packages/MUMmer-3.21/scripts:/packages/MUMmer-3.21/aux_bin
module load mummer/3.22
URL: http://mummer.sourceforge.net/
Tags:
proc ModulesHelp { } {
puts stderr "MUMmer-3.22"
puts stderr "TAGS: bioinformatics, sequencing"
puts stderr "url: http://mummer.sourceforge.net/"
}
module-whatis "MUMmer-3.22"
prepend-path PATH /packages/MUMmer-3.22:/packages/MUMmer-3.22/scripts:/packages/MUMmer-3.22/aux_bin
module load ncbi-blast/2.2.23
Tags:
proc ModulesHelp { } {
puts stderr "ncbi-blast-2.2.23"
puts stderr "TAGS: bioinformatics"
}
module-whatis "ncbi-blast-2.2.23"
prepend-path PATH /packages/ncbi-blast-2.2.23/c++/ReleaseMT/bin
module load ncl/5.1.1
URL: http://hydrodictyon.eeb.uconn.edu/ncl/
Tags:
proc ModulesHelp { } {
puts stderr "ncl-5.1.1"
puts stderr "TAGS: bioinformatics"
puts stderr "url: http://hydrodictyon.eeb.uconn.edu/ncl/"
}
module-whatis "ncl-5.1.1"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/ncl/ncl-5.1.1/bin:/packages/ncl/ncl-5.1.1/sbin
prepend-path LD_LIBRARY_PATH /packages/ncl/ncl-5.1.1/lib:/packages/ncl/ncl-5.1.1/lib64:/packages/ncl/ncl-5.1.1/lib64/atlas
prepend-path MANPATH /packages/ncl/ncl-5.1.1/share/man
prepend-path CFLAGS "-I/packages/ncl/ncl-5.1.1/include"
prepend-path NCARG_ROOT /packages/ncl/ncl-5.1.1
prepend-path NCARG_LIB /packages/ncl/ncl-5.1.1/lib64/ncarg
prepend-path NCARG_DATABASE /packages/ncl/ncl-5.1.1/lib64/ncarg/database
prepend-path NCARG_FONTCAPS /packages/ncl/ncl-5.1.1/lib64/ncarg/fontcaps
prepend-path NCARG_GRAPHCAPS /packages/ncl/ncl-5.1.1/lib64/ncarg/graphcaps
prepend-path NCARG_NCARG /packages/ncl/ncl-5.1.1/share/ncarg
module load ncl/6.0.0
URL: http://hydrodictyon.eeb.uconn.edu/ncl/
Tags:
proc ModulesHelp { } {
puts stderr "ncl-6.0.0"
puts stderr "TAGS: bioinformatics"
puts stderr "url: http://hydrodictyon.eeb.uconn.edu/ncl/"
}
module-whatis "ncl-6.0.0"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/ncl/ncl-6.0.0/bin:/packages/ncl/ncl-6.0.0/sbin
prepend-path LD_LIBRARY_PATH /packages/ncl/ncl-6.0.0/lib
prepend-path MANPATH /packages/ncl/ncl-6.0.0/share/man
prepend-path CFLAGS "-I/packages/ncl/ncl-6.0.0/include"
prepend-path NCARG_ROOT /packages/ncl/ncl-6.0.0
prepend-path NCARG_LIB /packages/ncl/ncl-6.0.0/lib/ncarg
prepend-path NCARG_DATABASE /packages/ncl/ncl-6.0.0/lib/ncarg/database
prepend-path NCARG_FONTCAPS /packages/ncl/ncl-6.0.0/lib/ncarg/fontcaps
prepend-path NCARG_GRAPHCAPS /packages/ncl/ncl-6.0.0/lib/ncarg/graphcaps
module load paml/4.4d
Tags:
proc ModulesHelp { } {
puts stderr "paml 4.4d Phylogenetic Analysis by Maximum Likelihood"
puts stderr "TAGS: bioinformatics, phylogenetics"
}
module-whatis "paml 4.4d"
prepend-path PATH /packages/paml44/bin
module load pathway-tools/14.0
URL: http://bioinformatics.ai.sri.com/ptools/
Tags:
proc ModulesHelp { } {
puts stderr "pathway-tools-14.0"
puts stderr "TAGS: bioinformatics, visualization"
puts stderr "url: http://bioinformatics.ai.sri.com/ptools/"
}
module-whatis "pathway-tools-14.0"
prepend-path PATH /packages/pathway-tools-14.0
module load pedcheck/1.1
Tags:
proc ModulesHelp { } {
puts stderr "pedcheck-1.1"
puts stderr "TAGS: bioinformatics"
}
module-whatis "pedcheck-1.1"
prepend-path PATH /packages/pedcheck-1.1
module load picard/1.46
Tags:
proc ModulesHelp { } {
puts stderr "Picard 1.46"
puts stderr "TAGS: bioinformatics, java"
puts stderr "http://picard.sourceforge.net/"
}
module-whatis "Picard 1.46"
source $env(MODULEPATH)/.gui_warning
module load java
prereq java
prepend-path CLASSPATH /packages/picard/picard-tools-1.46/
module load picard/1.64
Tags:
proc ModulesHelp { } {
puts stderr "Picard 1.64"
puts stderr "TAGS: bioinformatics, java"
puts stderr "http://picard.sourceforge.net/"
}
module-whatis "Picard 1.64"
source $env(MODULEPATH)/.gui_warning
module load java
prereq java
prepend-path CLASSPATH /packages/picard/picard-tools-1.64/
module load plink/1.04
URL: http://pngu.mgh.harvard.edu/~purcell/plink/
Tags:
proc ModulesHelp { } {
puts stderr "plink-1.04"
puts stderr "TAGS: bioinformatics, genomics"
puts stderr "url: http://pngu.mgh.harvard.edu/~purcell/plink/"
}
module-whatis "plink-1.04"
prepend-path PATH /packages/plink-1.04
module load plink/1.07
URL: http://pngu.mgh.harvard.edu/~purcell/plink/
Tags:
proc ModulesHelp { } {
puts stderr "plink-1.07"
puts stderr "TAGS: bioinformatics, genomics"
puts stderr "url: http://pngu.mgh.harvard.edu/~purcell/plink/"
}
module-whatis "plink-1.07"
prepend-path PATH /packages/plink-1.07
module load rosetta/3.2.1
Tags:
proc ModulesHelp { } {
puts stderr "Rosetta-3.2.1"
puts stderr "TAGS: bioinformatics"
}
module-whatis "Rosetta-3.2.1"
prepend-path PATH /packages/rosetta3.2.1/rosetta_source/bin
prepend-path LD_LIBRARY_PATH /packages/rosetta-3.2.1/rosetta_source/lib
module load rosetta/3.3
Tags:
proc ModulesHelp { } {
puts stderr "Rosetta-3.3 (MPI Enabled)"
puts stderr "TAGS: bioinformatics"
}
module-whatis "Rosetta-3.3 (MPI Enabled)"
source $env(MODULEPATH)/.gui_warning
module load gcc/4.4.4
prereq gcc/4.4.4
module load openmpi/1.4.3-gnu
prereq openmpi/1.4.3-gnu
prepend-path PATH /packages/rosetta/rosetta_3.3/rosetta_source/bin
prepend-path LD_LIBRARY_PATH /packages/rosetta/rosetta_3.3/rosetta_source/lib
module load trans-abyss/1.2
URL: http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss
Tags:
proc ModulesHelp { } {
puts stderr "trans-ABySS v. 1.2"
puts stderr "TAGS: bioinformatics"
puts stderr "URL: http://www.bcgsc.ca/platform/bioinfo/software/trans-abyss"
}
module-whatis "trans-ABySS v. 1.2"
source $env(MODULEPATH)/.gui_warning
prepend-path PYTHONPATH /home/user/trans-ABySS
prepend-path PERL5LIB /home/user/trans-ABySS/wrappers
module load trinity/5192011
URL: http://TrinityRNASeq.sourceforge.net
Tags:
proc ModulesHelp { } {
puts stderr "trinity 5-19-2011"
puts stderr "TAGS: bioinformatics"
puts stderr "URL: http://TrinityRNASeq.sourceforge.net"
}
module-whatis "trinity 5-19-2011"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/trinityrna-seq
module load trinity/8202011
URL: http://TrinityRNASeq.sourceforge.net
Tags:
proc ModulesHelp { } {
puts stderr "trinity 8-20-2011"
puts stderr "TAGS: bioinformatics"
puts stderr "URL: http://TrinityRNASeq.sourceforge.net"
}
module-whatis "trinity 8-20-2011"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/trinityrnaseq_r2011-08-20
module load velvet/1.0.01
Tags:
proc ModulesHelp { } {
puts stderr "velvet-1.0.01"
puts stderr "TAGS: bioinformatics, phylogenetics"
}
module-whatis "velvet-1.0.01"
prepend-path PATH /packages/velvet-1.0.01
module load ant/1.8.1
Tags:
proc ModulesHelp { } {
puts stderr "Ant 1.8.1"
puts stderr "TAGS: build tools, java"
puts stderr "URL: http://ant.apache.org/"
}
module-whatis "Ant 1.8.1"
source $env(MODULEPATH)/.gui_warning
setenv JAVA_HOME /packages/java/latest
setenv ANT_HOME /packages/ant/apapche-ant-1.8.1
prepend-path PATH /packages/ant/apache-ant-1.8.1/bin
module load ant/1.8.2
Tags:
proc ModulesHelp { } {
puts stderr "Ant 1.8.2"
puts stderr "TAGS: build tools, java"
puts stderr "URL: http://ant.apache.org/"
}
module-whatis "Ant 1.8.2"
source $env(MODULEPATH)/.gui_warning
setenv JAVA_HOME /packages/java/latest
setenv ANT_HOME /packages/ant/apache-ant-1.8.2
prepend-path PATH /packages/ant/apache-ant-1.8.2/bin
module load nx_nastran/7.5.0
URL: http://www.plm.automation.siemens.com/en_sg/products/nx/simulation/nastran/index.shtml
Tags:
proc ModulesHelp { } {
puts stderr "NX-Nastran-7.5.0"
puts stderr "TAGS: CAD"
puts stderr "url: http://www.plm.automation.siemens.com/en_sg/products/nx/simulation/nastran/index.shtml"
}
module-whatis "NX-Nastran-7.5.0"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/nx_nastran/application/ugii/
prepend-path PATH /packages/nx_nastran/application/nxnastran/bin/
prepend-path UGII_BASE_DIR /packages/nx_nastran/application
prepend-path UGII_ROOT_DIR /packages/nx_nastran/application/bin/
prepend-path UGS_LICENSE_SERVER 28000@Pubkeyserver16.asu.edu
module load cp2k/2.3.43
Tags:
proc ModulesHelp { } {
puts stderr "CP2K 2.3.43"
puts stderr "TAGS: chemistry"
puts stderr "url: http://cp2k.berlios.de/"
}
module-whatis "CP2K 2.3.43"
source $env(MODULEPATH)/.gui_warning
module load openmpi/1.4.3-intel
prereq openmpi/1.4.3-intel
prepend-path PATH /packages/cp2k/exe/Linux-x86-64-intel
module load nwchem/5.1
URL: http://www.nwchem-sw.org/index.php/Main_Page
Tags:
proc ModulesHelp { } {
puts stderr "NWChem-5.1"
puts stderr "TAGS: chemistry"
puts stderr "url: http://www.nwchem-sw.org/index.php/Main_Page"
}
module-whatis "NWChem-5.1"
module load intel/10.1
prereq intel/10.1
prepend-path PATH /packages/NWChem-5.1/bin
module load nwchem/6.0
URL: http://www.nwchem-sw.org/index.php/Main_Page
Tags:
proc ModulesHelp { } {
puts stderr "NWChem-6.0"
puts stderr "TAGS: chemistry"
puts stderr "url: http://www.nwchem-sw.org/index.php/Main_Page"
}
module-whatis "NWChem-6.0"
source $env(MODULEPATH)/.gui_warning
exec /packages/NWChem-6.0/fix-resource.sh
module load mvapich2/1.6-intel
module load python/2.7.2
prereq mvapich2/1.6-intel
prepend-path PATH /packages/NWChem-6.0/bin
module load silvaco/2007_03
Tags:
proc ModulesHelp { } {
puts stderr "Silvaco EE Software Suite"
puts stderr "TAGS: circuit simulation, spice"
}
module-whatis "Silvaco EE Software Suite"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/silvaco/bin
prepend-path SFLM_SERVERS "enlicense7.eas.asu.edu"
module load silvaco/2011
Tags:
proc ModulesHelp { } {
puts stderr "Silvaco EE Software Suite 2011"
puts stderr "TAGS: circuit simulation, spice"
}
module-whatis "Silvaco EE Software Suite 2011"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/silvaco-2011/bin
prepend-path SFLM_SERVERS "enlicense7.eas.asu.edu"
module load hspice/b-2008.09
Tags:
proc ModulesHelp { } {
puts stderr "Synopsys HSPICE B-2008.09"
puts stderr "TAGS: circuit simulation, spice"
}
module-whatis "Synopsys HSPICE B-2008.09"
prepend-path PATH /packages/synopsys/hspice-B-2008.09/hspice/linux
prepend-path SNPSLMD_LICENSE_FILE "27000@enlicense6.eas.asu.edu"
module load hspice/c-2009.09-sp1
Tags:
proc ModulesHelp { } {
puts stderr "Synopsys HSPICE C-2009.09-SP1"
puts stderr "TAGS: circuit simulation, spice"
}
module-whatis "Synopsys HSPICE C-2009.09-SP1"
prepend-path PATH /packages/synopsys/C-2009.09-SP1/hspice/bin
prepend-path HSPICE_64 "1"
prepend-path SNPSLMD_LICENSE_FILE "27000@enlicense6.eas.asu.edu"
module load hspice/x-2005.09-sp1
Tags:
proc ModulesHelp { } {
puts stderr "Synopsys HSPICE X-2005.09-SP1"
puts stderr "TAGS: circuit simulation, spice"
}
module-whatis "Synopsys HSPICE X-2005.09-SP1"
prepend-path PATH /packages/synopsys/hspice/linux
prepend-path SNPSLMD_LICENSE_FILE "27000@enlicense6.eas.asu.edu"
module load nanosim/b-2008.09
URL: http://www.synopsys.com/Tools/Verification/AMSVerification/CircuitSimulation/Pages/NanoSim.aspx
Tags:
proc ModulesHelp { } {
puts stderr "Synopsys NanoSim Version B-2008.09"
puts stderr "TAGS: circuit simulation"
puts stderr "url: http://www.synopsys.com/Tools/Verification/AMSVerification/CircuitSimulation/Pages/NanoSim.aspx"
}
module-whatis "Synopsys NanoSim Version B-2008.09"
prepend-path PATH /packages/synopsys/nanosim/linux/ns/bin
prepend-path SNPSLMD_LICENSE_FILE "27000@enlicense6.eas.asu.edu"
module load gcc/4.4.0
Tags:
proc ModulesHelp { } {
puts stderr "Alias of GCC 4.4.4"
puts stderr "TAGS: compilers"
}
module-whatis "Alias of GCC 4.4.4"
prepend-path PATH /packages/gcc-4.4.4/bin
module load berkeley_upc/2.6.0
URL: http://upc.lbl.gov/
Tags:
proc ModulesHelp { } {
puts stderr "berkeley_upc-2.6.0"
puts stderr "TAGS: compilers"
puts stderr "URL: http://upc.lbl.gov/"
}
module-whatis "berkeley_upc-2.6.0"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/berkeley_upc-2.6.0/bin
prepend-path MANPATH /packages/berkeley_upc-2.6.0/man
module load gcc/3.4.6
Tags:
proc ModulesHelp { } {
puts stderr "GCC 3.4.6 including g77 (Unsupported - for legacy builds only)"
puts stderr "TAGS: compilers"
}
module-whatis "GCC 3.4.6 including g77 (Unsupported - for legacy builds only)"
prepend-path PATH /packages/gcc-3.4.6/bin
prepend-path LD_LIBRARY_PATH /packages/gcc-3.4.6/lib:/packages/gcc-3.4.6/lib64
prepend-path MANPATH /packages/gcc-3.4.6/man
module load gcc/4.4.4
Tags:
proc ModulesHelp { } {
puts stderr "GCC 4.4.4 including gfortran"
puts stderr "TAGS: compilers"
}
module-whatis "GCC 4.4.4 including gfortran"
prepend-path PATH /packages/gcc-4.4.4/bin
module load gcc/4.6.2
Tags:
proc ModulesHelp { } {
puts stderr "GCC 4.6.2 including gfortran"
puts stderr "TAGS: compilers"
}
module-whatis "GCC 4.6.2 including gfortran"
prepend-path PATH /packages/gcc/gcc-4.6.2/bin
prepend-path LD_LIBRARY_PATH /packages/gcc/gcc-4.6.2/lib
prepend-path LD_LIBRARY_PATH /packages/gcc/gcc-4.6.2/lib64
module load gcc/4.6.3
Tags:
proc ModulesHelp { } {
puts stderr "GCC 4.6.3 including gfortran"
puts stderr "TAGS: compilers"
}
module-whatis "GCC 4.6.3 including gfortran"
prepend-path PATH /packages/gcc/gcc-4.6.3/bin
prepend-path LD_LIBRARY_PATH /packages/gcc/gcc-4.6.3/lib
prepend-path LD_LIBRARY_PATH /packages/gcc/gcc-4.6.3/lib64
module load intel/10.1
URL: http://software.intel.com/en-us/articles/intel-cluster-studio
Tags:
proc ModulesHelp { } {
puts stderr {Intel Compilers 10.1.015, MKL 10.0.2.018
TAGS: compilers
URL: http://software.intel.com/en-us/articles/intel-cluster-studio
Math Kernel Library Link Line Advisor:
http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/
}
}
conflict intel/11.1 intel/12.0
module-whatis "Intel Compilers 10.1.015, MKL 10.0.2.018"
prepend-path PATH /packages/intel/cce/10.1.015/bin:/packages/intel/fce/10.1.015/bin:/packages/intel/idbe/10.1.015/bin
prepend-path LD_LIBRARY_PATH /packages/intel/cce/10.1.015/lib:/packages/intel/mkl/10.0.2.018/lib/em64t:/packages/intel/fce/10.1.015/lib:/packages/intel/mkl/10.0.2.018/lib/em64t
prepend-path MANPATH /packages/intel/cce/10.1.015/man:/packages/intel/fce/10.1.015/man:/packages/intel/mkl/10.0.2.018/man
prepend-path MKL_LIB /packages/intel/mkl/10.0.2.018/lib/em64t
prepend-path MKL_INC /packages/intel/mkl/10.0.2.018/include
setenv MKL_LDFLAGS "-L/packages/intel/mkl/10.0.2.018/lib/em64t -lmkl_solver -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core"
setenv MKL_NUM_THREADS "1"
module load intel/11.1
URL: http://software.intel.com/en-us/articles/intel-cluster-studio
Tags:
proc ModulesHelp { } {
puts stderr {Intel Compilers 11.1.072, MKL 10.2.5.035
TAGS: compilers
URL: http://software.intel.com/en-us/articles/intel-cluster-studio
Math Kernel Library Link Line Advisor:
http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/
}
}
conflict intel/10.1 intel/12.0
module-whatis "Intel Compilers 11.1.072, MKL 10.2.5.035"
prepend-path INTEL_LICENSE_FILE /packages/intel-ct/licenses
prepend-path CLASSPATH /packages/intel-ct/itac/8.0.0.011/itac/lib_impi4
prepend-path CPATH /packages/intel-ct/mkl/10.2.5.035/include
prepend-path FPATH /packages/intel-ct/mkl/10.2.5.035/include
prepend-path IDB_HOME /packages/intel-ct/ictce/4.0.0.020/idb/bin/intel64
prepend-path I_MPI_ROOT /packages/intel-ct/impi/4.0.0.028
prepend-path INCLUDE /packages/intel-ct/mkl/10.2.5.035/include
prepend-path LD_LIBRARY_PATH /packages/intel-ct/itac/8.0.0.011/itac/slib_impi4:/packages/intel-ct/mkl/10.2.5.035/lib/em64t:/packages/intel-ct/impi/4.0.0.028/intel64/lib:/packages/intel-ct/Compiler/11.1/072/lib/intel64:/packages/intel-ct/Compiler/11.1/072/lib/intel64
prepend-path LIBRARY_PATH /packages/intel-ct/mkl/10.2.5.035/lib/em64t:/packages/intel-ct/Compiler/11.1/072/lib/intel64:/packages/intel-ct/Compiler/11.1/072/lib/intel64
prepend-path MANPATH /packages/intel-ct/itac/8.0.0.011/man:/packages/intel-ct/mkl/10.2.5.035/man/en_US:/packages/intel-ct/impi/4.0.0.028/man:/packages/intel-ct/Compiler/11.1/072/man/en_US:/packages/intel-ct/Compiler/11.1/072/man/en_US
prepend-path MKLROOT /packages/intel-ct/mkl/10.2.5.035
prepend-path PATH /packages/intel-ct/ictce/4.0.0.020/bin:/packages/intel-ct/itac/8.0.0.011/bin:/packages/intel-ct/Compiler/11.1/072/bin/intel64:/packages/intel-ct/Compiler/11.1/072/bin/intel64
prepend-path VT_LIB_DIR /packages/intel-ct/itac/8.0.0.011/itac/lib_impi4
prepend-path VT_ROOT /packages/intel-ct/itac/8.0.0.011
prepend-path VT_SLIB_DIR /packages/intel-ct/itac/8.0.0.011/itac/slib_impi4
setenv VT_ADD_LIBS "-ldwarf -lelf -lvtunwind -lnsl -lm -ldl -lpthread"
setenv VT_MPI "impi4"
module load intel/12.0
URL: http://software.intel.com/en-us/articles/intel-cluster-studio
Tags:
proc ModulesHelp { } {
puts stderr {Intel Compilers 12.0.0.084, MKL 10.3.1.107
TAGS: compilers
URL: http://software.intel.com/en-us/articles/intel-cluster-studio
Math Kernel Library Link Line Advisor:
http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/
}
}
conflict intel/10.1 intel/11.1
module-whatis "Intel Compilers 12.0.0.084, MKL 10.3.1.107"
prepend-path INTEL_LICENSE_FILE /packages/intel-cs/licenses
prepend-path CPATH /packages/intel-cs/composerxe-2011.1.107//mkl/include
prepend-path FPATH /packages/intel-cs/composerxe-2011.1.107/mkl/include
prepend-path INCLUDE /packages/intel-cs/composerxe-2011.1.107/mkl/include
prepend-path LD_LIBRARY_PATH /packages/intel-cs/composerxe-2011.1.107/compiler/lib/intel64:/packages/intel-cs/composerxe-2011.1.107/mpirt/lib/intel64:/packages/intel-cs/composerxe-2011.1.107/compiler/lib/intel64:/packages/intel-cs/composerxe-2011.1.107/mkl/lib/intel64
prepend-path LIBRARY_PATH /packages/intel-cs/composerxe-2011.1.107/compiler/lib/intel64:/packages/intel-cs/composerxe-2011.1.107/compiler/lib/intel64:/packages/intel-cs/composerxe-2011.1.107/mkl/lib/intel64
prepend-path MANPATH /packages/intel-cs/composerxe-2011.1.107/man/en_US:/packages/intel-cs/composerxe-2011.1.107/man/en_US
prepend-path MIC_LD_LIBRARY_PATH /packages/intel-cs/composerxe-2011.1.107/compiler/lib/mic
prepend-path MKLROOT /packages/intel-cs/composerxe-2011.1.107/mkl
setenv NLSPATH "/packages/intel-cs/composerxe-2011.1.107/compiler/lib/intel64/locale/%l_%t/%N:/packages/intel-cs/composerxe-2011.1.107/mkl/lib/intel64/locale/%l_%t/%N:/packages/intel-cs/composerxe-2011.1.107/debugger/intel64/locale/%l_%t/%N"
prepend-path PATH /packages/intel-cs/composerxe-2011.1.107/bin/intel64
module load intel/12.1
URL: http://software.intel.com/en-us/articles/intel-cluster-studio
Tags:
proc ModulesHelp { } {
puts stderr {Intel Compilers 12.1.0 20110811, MKL 10.3.1.107
TAGS: compilers
URL: http://software.intel.com/en-us/articles/intel-cluster-studio
Math Kernel Library Link Line Advisor:
http://software.intel.com/en-us/articles/intel-mkl-link-line-advisor/
}
}
conflict intel/10.1 intel/11.1 intel/12.0
module load java
prereq java
module-whatis "Intel Compilers 12.1.0 20110811, MKL 10.3.1.107"
prepend-path INTEL_LICENSE_FILE /packages/intel-12.1/licenses
prepend-path CPATH /packages/intel-12.1/composerxe/mkl/include
prepend-path FPATH /packages/intel-12.1/composerxe/mkl/include
prepend-path INCLUDE /packages/intel-12.1/composerxe/mkl/include
prepend-path LD_LIBRARY_PATH /packages/intel-12.1/composerxe/compiler/lib/intel64:/packages/intel-12.1/composerxe/mpirt/lib/intel64:/packages/intel-12.1/composerxe/compiler/lib/intel64:/packages/intel-12.1/composerxe/mkl/lib/intel64
prepend-path LIBRARY_PATH /packages/intel-12.1/composerxe/compiler/lib/intel64:/packages/intel-12.1/composerxe/compiler/lib/intel64:/packages/intel-12.1/composerxe/mkl/lib/intel64
prepend-path MANPATH /packages/intel-12.1/composerxe/man/en_US:/packages/intel-12.1/composerxe/man/en_US
prepend-path MIC_LD_LIBRARY_PATH /packages/intel-12.1/composerxe/compiler/lib/mic
prepend-path MKLROOT /packages/intel-12.1/composerxe/mkl
setenv NLSPATH "/packages/intel-12.1/composerxe/compiler/lib/intel64/locale/%l_%t/%N:/packages/intel-12.1/composerxe/mkl/lib/intel64/locale/%l_%t/%N:/packages/intel-12.1/composerxe/debugger/intel64/locale/%l_%t/%N"
prepend-path PATH /packages/intel-12.1/composerxe/bin
module load java/1.6.0_21
Tags:
proc ModulesHelp { } {
puts stderr "Java jdk1.6.0_21"
puts stderr "TAGS: java, compilers"
}
module-whatis "Java jdk1.6.0_21"
if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
puts stderr "the following command to launch an interactive session before attempting to use"
puts stderr "or compile Java programs: qsub -X -I"
exit
}
prepend-path PATH /packages/java/jdk1.6.0_21/bin
prepend-path MANPATH /packages/java/jdk1.6.0_21/man
setenv JAVA_HOME /packages/java/jdk1.6.0_21
module load java/1.6.0_22
Tags:
proc ModulesHelp { } {
puts stderr "Java jdk1.6.0_22"
puts stderr "TAGS: java, compilers"
}
module-whatis "Java jdk1.6.0_22"
if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
puts stderr "the following command to launch an interactive session before attempting to use"
puts stderr "or compile Java programs: qsub -X -I"
exit
}
prepend-path PATH /packages/java/jdk1.6.0_22/bin
prepend-path MANPATH /packages/java/jdk1.6.0_22/man
setenv JAVA_HOME /packages/java/jdk1.6.0_22
module load java/1.6.0_24
Tags:
proc ModulesHelp { } {
puts stderr "Java jdk1.6.0_24"
puts stderr "TAGS: java, compilers"
}
module-whatis "Java jdk1.6.0_24"
if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
puts stderr "the following command to launch an interactive session before attempting to use"
puts stderr "or compile Java programs: qsub -X -I"
exit
}
prepend-path PATH /packages/java/jdk1.6.0_24/bin
prepend-path MANPATH /packages/java/jdk1.6.0_24/man
setenv JAVA_HOME /packages/java/jdk1.6.0_24
module load java/1.6.0_25
Tags:
proc ModulesHelp { } {
puts stderr "Java jdk1.6.0_25"
puts stderr "TAGS: java, compilers"
}
module-whatis "Java jdk1.6.0_25"
if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
puts stderr "the following command to launch an interactive session before attempting to use"
puts stderr "or compile Java programs: qsub -X -I"
exit
}
prepend-path PATH /packages/java/jdk1.6.0_25/bin
prepend-path MANPATH /packages/java/jdk1.6.0_25/man
setenv JAVA_HOME /packages/java/jdk1.6.0_25
module load java/1.6.0_26
Tags:
proc ModulesHelp { } {
puts stderr "Java jdk1.6.0_26"
puts stderr "TAGS: java, compilers"
}
module-whatis "Java jdk1.6.0_26"
if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
puts stderr "the following command to launch an interactive session before attempting to use"
puts stderr "or compile Java programs: qsub -X -I"
exit
}
prepend-path PATH /packages/java/jdk1.6.0_26/bin
prepend-path MANPATH /packages/java/jdk1.6.0_26/man
setenv JAVA_HOME /packages/java/jdk1.6.0_26
module load java/1.6.0_30
Tags:
proc ModulesHelp { } {
puts stderr "Java jdk1.6.0_30"
puts stderr "TAGS: java, compilers"
}
module-whatis "Java jdk1.6.0_30"
if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
puts stderr "the following command to launch an interactive session before attempting to use"
puts stderr "or compile Java programs: qsub -X -I"
exit
}
prepend-path PATH /packages/java/jdk1.6.0_30/bin
prepend-path MANPATH /packages/java/jdk1.6.0_30/man
setenv JAVA_HOME /packages/java/jdk1.6.0_30
module load solarisstudio/12.3
Tags:
proc ModulesHelp { } {
puts stderr "Oracle Solaris Studio 12.3 C, C++, Fortran Compilers for Linux"
puts stderr "TAGS: compilers"
}
module-whatis "Oracle Solaris Studio 12.3 C, C++, Fortran Compilers for Linux"
module load java
prereq java
prepend-path PATH /packages/solarisstudio/12.3/SolarisStudio12.3-linux-x86-bin/solarisstudio12.3/bin
prepend-path LD_LIBRARY_PATH /packages/solarisstudio/12.3/SolarisStudio12.3-linux-x86-bin/solarisstudio12.3/lib
module load abaqus/6.7-1
URL: http://www.simulia.com/products/abaqus_cae.html
Tags:
proc ModulesHelp { } {
puts stderr "Abaqus CAE 6.7-1"
puts stderr "TAGS: finite element analysis, computer aided engineering"
puts stderr "URL: http://www.simulia.com/products/abaqus_cae.html"
}
module-whatis "Abaqus CAE 6.7-1"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/Abaqus/Commands
module load abaqus/6.9-2
URL: http://www.simulia.com/products/abaqus_cae.html
Tags:
proc ModulesHelp { } {
puts stderr "Abaqus CAE 6.9-2"
puts stderr "TAGS: finite element analysis, computer aided engineering"
puts stderr "URL: http://www.simulia.com/products/abaqus_cae.html"
}
module-whatis "Abaqus CAE 6.9-2"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/Abaqus-6.9.2/Commands
module load ddt/2.2.1
Tags:
proc ModulesHelp { } {
puts stderr "Allinea DDT Version 2.2.1"
puts stderr "TAGS: debuggers"
}
module-whatis "Allinea DDT Version 2.2.1"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/allinea/ddt/bin
setenv DDTCONFIG /packages/allinea/ddt/templates/config.ddt
module load valgrind/3.5.0
Tags:
proc ModulesHelp { } {
puts stderr "Valgrind 3.5.0"
puts stderr "TAGS: debuggers"
puts stderr "URL: http://www.valgrind.org"
}
module-whatis "Valgrind 3.5.0"
prepend-path PATH /packages/valgrind/bin
module load meep/1.1.1-mpi
URL: http://ab-initio.mit.edu/wiki/index.php/Meep
Tags:
proc ModulesHelp { } {
puts stderr "Meep-1.1.1 MPI version with Intel v12, MKL v10.3, OpenMPI 1.4.3"
puts stderr "TAGS: finite difference"
puts stderr "url: http://ab-initio.mit.edu/wiki/index.php/Meep"
}
module-whatis "Meep-1.1.1 MPI version with Intel v12, MKL v10.3, OpenMPI 1.4.3"
module load hdf5/1.8.6-intel-openmpi
prereq hdf5/1.8.6-intel-openmpi
prepend-path PATH /packages/meep-1.1.1-mpi/bin
prepend-path LD_LIBRARY_PATH /packages/meep-1.1.1-mpi/lib:/packages/gsl/lib
prepend-path MANPATH /packages/meep-1.1.1-mpi/share/man
module load meep/1.1.1
URL: http://ab-initio.mit.edu/wiki/index.php/Meep
Tags:
proc ModulesHelp { } {
puts stderr "Meep-1.1.1 with Intel v12 and MKL v10.3"
puts stderr "TAGS: finite difference"
puts stderr "url: http://ab-initio.mit.edu/wiki/index.php/Meep"
}
module-whatis "Meep-1.1.1 with Intel v12 and MKL v10.3"
module load hdf5/1.8.6-intel-serial
prereq hdf5/1.8.6-intel-serial
prepend-path PATH /packages/meep-1.1.1/bin
prepend-path LD_LIBRARY_PATH /packages/meep-1.1.1/lib:/packages/gsl/lib
prepend-path MANPATH /packages/meep-1.1.1/share/man
module load abaqus/6.7-1
URL: http://www.simulia.com/products/abaqus_cae.html
Tags:
proc ModulesHelp { } {
puts stderr "Abaqus CAE 6.7-1"
puts stderr "TAGS: finite element analysis, computer aided engineering"
puts stderr "URL: http://www.simulia.com/products/abaqus_cae.html"
}
module-whatis "Abaqus CAE 6.7-1"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/Abaqus/Commands
module load abaqus/6.9-2
URL: http://www.simulia.com/products/abaqus_cae.html
Tags:
proc ModulesHelp { } {
puts stderr "Abaqus CAE 6.9-2"
puts stderr "TAGS: finite element analysis, computer aided engineering"
puts stderr "URL: http://www.simulia.com/products/abaqus_cae.html"
}
module-whatis "Abaqus CAE 6.9-2"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/Abaqus-6.9.2/Commands
module load hfss/12.0.1
Tags:
proc ModulesHelp { } {
puts stderr "Ansoft HFSS 12.0.1"
puts stderr "TAGS: finite element analysis"
}
module-whatis "Ansoft HFSS 12.0.1"
prepend-path PATH /packages/hfss/ansoft/hfss12
module load hfss/12.1
Tags:
proc ModulesHelp { } {
puts stderr "Ansoft HFSS 12.1"
puts stderr "TAGS: finite element analysis"
}
module-whatis "Ansoft HFSS 12.1"
prepend-path PATH /packages/hfss12.1/ansoft/hfss12
module load ansysfluent/12.1
URL: http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT
Tags:
proc ModulesHelp { } {
puts stderr "Ansys 12.1 Fluent"
puts stderr "TAGS: fluid dynamics"
puts stderr "URL: http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT"
}
module-whatis "Ansys 12.1 Fluent"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/ansys_inc/v121/fluent/bin
setenv ANSYSLI_SERVERS "2325@fluentflex"
setenv FLUENTLM_LICENSE_FILE "1055@fluentflex"
prepend-path LD_LIBRARY_PATH /usr/lib64
module load ansysworkbench/12.1
URL: http://www.ansys.com/Products/Workflow+Technology/ANSYS+Workbench+Platform
Tags:
proc ModulesHelp { } {
puts stderr "Ansys 12.1 Workbench runwb2"
puts stderr "TAGS: fluid dynamics"
puts stderr "URL: http://www.ansys.com/Products/Workflow+Technology/ANSYS+Workbench+Platform"
}
module-whatis "Ansys 12.1 Workbench runwb2"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/ansys_inc/v121/Framework/bin/Linux64
prepend-path LD_LIBRARY_PATH /packages/ansys_inc/v121/Framework/bin/Linux64:/packages/ansys_inc/v121/Framework/bin/Linux64/Mesa:/usr/lib64
setenv ANSYSLI_SERVERS "2325@fluentflex"
setenv FLUENTLM_LICENSE_FILE "1055@fluentflex"
module load ansysfluent/12.1.4
URL: http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT
Tags:
proc ModulesHelp { } {
puts stderr "Ansys 12.1.4 Fluent"
puts stderr "TAGS: fluid dynamics"
puts stderr "URL: http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT"
}
module-whatis "Ansys 12.1.4 Fluent"
source $env(MODULEPATH)/.gui_warning
exec /packages/ansys_inc-12.1.4/utils/fix_license.sh
prepend-path PATH /packages/ansys_inc-12.1.4/v121/fluent/bin
prepend-path LD_LIBRARY_PATH /packages/ansys_inc-12.1.4/v121/Framework/bin/Linux64:/packages/ansys_inc-12.1.4/v121/Framework/bin/Linux64/Mesa:/usr/lib64
module load ansysworkbench/12.1.4
URL: http://www.ansys.com/Products/Workflow+Technology/ANSYS+Workbench+Platform
Tags:
proc ModulesHelp { } {
puts stderr "Ansys 12.14 Workbench runwb2"
puts stderr "TAGS: fluid dynamics"
puts stderr "URL: http://www.ansys.com/Products/Workflow+Technology/ANSYS+Workbench+Platform"
}
module-whatis "Ansys 12.1.4 Workbench runwb2"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/ansys_inc-12.1.4/v121/Framework/bin/Linux64
prepend-path LD_LIBRARY_PATH /packages/ansys_inc-12.1.4/v121/Framework/bin/Linux64:/packages/ansys_inc-12.1.4/v121/Framework/bin/Linux64/Mesa:/usr/lib64
module load ansysfluent/13
URL: http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT
Tags:
proc ModulesHelp { } {
puts stderr "Ansys 13 Fluent"
puts stderr "TAGS: fluid dynamics"
puts stderr "URL: http://www.ansys.com/Products/Simulation+Technology/Fluid+Dynamics/ANSYS+FLUENT"
}
module-whatis "Ansys 13 Fluent"
source $env(MODULEPATH)/.gui_warning
exec /packages/ansys_inc-13/utils/fix_license.sh
prepend-path PATH /packages/ansys_inc-13/v130/fluent/bin
prepend-path LD_LIBRARY_PATH /packages/ansys_inc-13/v130/Framework/bin/Linux64:/packages/ansys_inc-13/v130/Framework/bin/Linux64/Mesa:/usr/lib64
module load ansysworkbench/13
URL: http://www.ansys.com/Products/Workflow+Technology/ANSYS+Workbench+Platform
Tags:
proc ModulesHelp { } {
puts stderr "Ansys 13 Workbench runwb2"
puts stderr "TAGS: fluid dynamics"
puts stderr "URL: http://www.ansys.com/Products/Workflow+Technology/ANSYS+Workbench+Platform"
}
module-whatis "Ansys 13 Workbench runwb2"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/ansys_inc-13/v130/Framework/bin/Linux64
prepend-path LD_LIBRARY_PATH /packages/ansys_inc-13/v130/Framework/bin/Linux64:/packages/ansys_inc-13/v130/Framework/bin/Linux64/Mesa:/usr/lib64
module load tribs/3.0-meshbuilder
Tags:
proc ModulesHelp { } {
puts stderr "MeshBuilder"
puts stderr "TAGS: fluid dynamics, meshing"
}
module-whatis "MeshBuilder"
prepend-path PATH /packages/MeshBuilder
module load bedtools/2.12.0
URL: http://code.google.com/p/bedtools/downloads/list
Tags:
proc ModulesHelp { } {
puts stderr "BEDTools-2.12.0"
puts stderr "TAGS: genomics"
puts stderr "URL: http://code.google.com/p/bedtools/downloads/list"
}
module-whatis "BEDTools-2.12.0"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/BEDTools-Version-2.12.0/bin
module load bedtools/2.9.0
URL: http://code.google.com/p/bedtools/
Tags:
proc ModulesHelp { } {
puts stderr "BEDTools-2.9.0"
puts stderr "TAGS: genomics"
puts stderr "URL: http://code.google.com/p/bedtools/"
}
module-whatis "BEDTools-2.9.0"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/BEDTools-2.9.0/bin
module load bioperl/1.6.1
Tags:
proc ModulesHelp { } {
puts stderr "BioPerl-1.6.1"
puts stderr "TAGS: bioinformatics, genomics"
puts stderr "URL: http://www.bioperl.org/"
}
module-whatis "BioPerl-1.6.1"
source $env(MODULEPATH)/.gui_warning
prepend-path PERL5LIB /packages/BioPerl-1.6.1/lib/perl5
prepend-path PATH /packages/BioPerl-1.6.1/bin
module load biopython/1.53
URL: http://biopython.org/wiki/Biopython
Tags:
proc ModulesHelp { } {
puts stderr "BioPython 1.53"
puts stderr "TAGS: bioinformatics, genomics"
puts stderr "URL: http://biopython.org/wiki/Biopython"
}
module-whatis "BioPython 1.53"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/biopython-1.53/lib64/python2.4/site-packages/Bio
prepend-path PYTHONPATH /packages/biopython-1.53/lib64/python2.4/site-packages
module load casava/1.8.0
Tags:
proc ModulesHelp { } {
puts stderr "CASAVA_v1.8.0"
puts stderr "TAGS: genomics"
}
module-whatis "CASAVA_v1.8.0"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/CASAVA_v1.8.0/bin
module load casava/1.8.2
Tags:
proc ModulesHelp { } {
puts stderr "CASAVA_v1.8.2"
puts stderr "TAGS: genomics"
}
module-whatis "CASAVA_v1.8.2"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/CASAVA_v1.8.2/bin
module load dindel/1.01
Tags:
proc ModulesHelp { } {
puts stderr "dindel-1.01"
puts stderr "TAGS: genomics"
}
module-whatis "dindel-1.01"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/dindel-1.01:/packages/dindel-1.01/utils
module load mosaik/2.1.33
URL: http://code.google.com/p/mosaik-aligner/
Tags:
proc ModulesHelp { } {
puts stderr "mosaik-2.1.33"
puts stderr "TAGS: bioinformatics, genomics"
puts stderr "url: http://code.google.com/p/mosaik-aligner/"
}
module-whatis "mosaik-2.1.33"
prepend-path PATH /packages/mosaik-2.1.33
module load plink/1.04
URL: http://pngu.mgh.harvard.edu/~purcell/plink/
Tags:
proc ModulesHelp { } {
puts stderr "plink-1.04"
puts stderr "TAGS: bioinformatics, genomics"
puts stderr "url: http://pngu.mgh.harvard.edu/~purcell/plink/"
}
module-whatis "plink-1.04"
prepend-path PATH /packages/plink-1.04
module load plink/1.07
URL: http://pngu.mgh.harvard.edu/~purcell/plink/
Tags:
proc ModulesHelp { } {
puts stderr "plink-1.07"
puts stderr "TAGS: bioinformatics, genomics"
puts stderr "url: http://pngu.mgh.harvard.edu/~purcell/plink/"
}
module-whatis "plink-1.07"
prepend-path PATH /packages/plink-1.07
module load ant/1.8.1
Tags:
proc ModulesHelp { } {
puts stderr "Ant 1.8.1"
puts stderr "TAGS: build tools, java"
puts stderr "URL: http://ant.apache.org/"
}
module-whatis "Ant 1.8.1"
source $env(MODULEPATH)/.gui_warning
setenv JAVA_HOME /packages/java/latest
setenv ANT_HOME /packages/ant/apapche-ant-1.8.1
prepend-path PATH /packages/ant/apache-ant-1.8.1/bin
module load ant/1.8.2
Tags:
proc ModulesHelp { } {
puts stderr "Ant 1.8.2"
puts stderr "TAGS: build tools, java"
puts stderr "URL: http://ant.apache.org/"
}
module-whatis "Ant 1.8.2"
source $env(MODULEPATH)/.gui_warning
setenv JAVA_HOME /packages/java/latest
setenv ANT_HOME /packages/ant/apache-ant-1.8.2
prepend-path PATH /packages/ant/apache-ant-1.8.2/bin
module load gatk/1.0.5974
Tags:
proc ModulesHelp { } {
puts stderr "gatk 1.0.5974"
puts stderr "TAGS: java"
puts stderr "http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit"
}
module-whatis "gatk 1.0.5974"
source $env(MODULEPATH)/.gui_warning
module load java
module load ant
module load python/2.7.2
setenv JAVA_HOME /packages/java/latest
setenv ANT_HOME /packages/ant/apache-ant-1.8.2
prepend-path CLASSPATH /packages/gatk/GenomeAnalysisTK-1.0.5974
prepend-path PATH /packages/gatk/GenomeAnalysisTK-1.0.5974/perl
prepend-path PATH /packages/gatk/GenomeAnalysisTK-1.0.5974/python
module load gatk/1.3-24-gc8b1c92
Tags:
proc ModulesHelp { } {
puts stderr "gatk 1.3-24-gc8b1c92"
puts stderr "TAGS: java"
puts stderr "http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit"
}
module-whatis "gatk 1.3-24-gc8b1c92"
source $env(MODULEPATH)/.gui_warning
module load java
module load ant
module load python/2.7.2
setenv JAVA_HOME /packages/java/latest
setenv ANT_HOME /packages/ant/apache-ant-1.8.2
prepend-path CLASSPATH /packages/gatk/GenomeAnalysisTK-1.3-24-gc8b1c92
prepend-path PATH /packages/gatk/GenomeAnalysisTK-1.3-24-gc8b1c92/perl
prepend-path PATH /packages/gatk/GenomeAnalysisTK-1.3-24-gc8b1c92/python
module load java/1.6.0_21
Tags:
proc ModulesHelp { } {
puts stderr "Java jdk1.6.0_21"
puts stderr "TAGS: java, compilers"
}
module-whatis "Java jdk1.6.0_21"
if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
puts stderr "the following command to launch an interactive session before attempting to use"
puts stderr "or compile Java programs: qsub -X -I"
exit
}
prepend-path PATH /packages/java/jdk1.6.0_21/bin
prepend-path MANPATH /packages/java/jdk1.6.0_21/man
setenv JAVA_HOME /packages/java/jdk1.6.0_21
module load java/1.6.0_22
Tags:
proc ModulesHelp { } {
puts stderr "Java jdk1.6.0_22"
puts stderr "TAGS: java, compilers"
}
module-whatis "Java jdk1.6.0_22"
if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
puts stderr "the following command to launch an interactive session before attempting to use"
puts stderr "or compile Java programs: qsub -X -I"
exit
}
prepend-path PATH /packages/java/jdk1.6.0_22/bin
prepend-path MANPATH /packages/java/jdk1.6.0_22/man
setenv JAVA_HOME /packages/java/jdk1.6.0_22
module load java/1.6.0_24
Tags:
proc ModulesHelp { } {
puts stderr "Java jdk1.6.0_24"
puts stderr "TAGS: java, compilers"
}
module-whatis "Java jdk1.6.0_24"
if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
puts stderr "the following command to launch an interactive session before attempting to use"
puts stderr "or compile Java programs: qsub -X -I"
exit
}
prepend-path PATH /packages/java/jdk1.6.0_24/bin
prepend-path MANPATH /packages/java/jdk1.6.0_24/man
setenv JAVA_HOME /packages/java/jdk1.6.0_24
module load java/1.6.0_25
Tags:
proc ModulesHelp { } {
puts stderr "Java jdk1.6.0_25"
puts stderr "TAGS: java, compilers"
}
module-whatis "Java jdk1.6.0_25"
if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
puts stderr "the following command to launch an interactive session before attempting to use"
puts stderr "or compile Java programs: qsub -X -I"
exit
}
prepend-path PATH /packages/java/jdk1.6.0_25/bin
prepend-path MANPATH /packages/java/jdk1.6.0_25/man
setenv JAVA_HOME /packages/java/jdk1.6.0_25
module load java/1.6.0_26
Tags:
proc ModulesHelp { } {
puts stderr "Java jdk1.6.0_26"
puts stderr "TAGS: java, compilers"
}
module-whatis "Java jdk1.6.0_26"
if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
puts stderr "the following command to launch an interactive session before attempting to use"
puts stderr "or compile Java programs: qsub -X -I"
exit
}
prepend-path PATH /packages/java/jdk1.6.0_26/bin
prepend-path MANPATH /packages/java/jdk1.6.0_26/man
setenv JAVA_HOME /packages/java/jdk1.6.0_26
module load java/1.6.0_30
Tags:
proc ModulesHelp { } {
puts stderr "Java jdk1.6.0_30"
puts stderr "TAGS: java, compilers"
}
module-whatis "Java jdk1.6.0_30"
if { [module-info mode load] && [regexp {saguaro} [uname nodename]] } {
puts stderr "The Java Development Kit is not intended for use on the login nodes. Please use"
puts stderr "the following command to launch an interactive session before attempting to use"
puts stderr "or compile Java programs: qsub -X -I"
exit
}
prepend-path PATH /packages/java/jdk1.6.0_30/bin
prepend-path MANPATH /packages/java/jdk1.6.0_30/man
setenv JAVA_HOME /packages/java/jdk1.6.0_30
module load picard/1.46
Tags:
proc ModulesHelp { } {
puts stderr "Picard 1.46"
puts stderr "TAGS: bioinformatics, java"
puts stderr "http://picard.sourceforge.net/"
}
module-whatis "Picard 1.46"
source $env(MODULEPATH)/.gui_warning
module load java
prereq java
prepend-path CLASSPATH /packages/picard/picard-tools-1.46/
module load picard/1.64
Tags:
proc ModulesHelp { } {
puts stderr "Picard 1.64"
puts stderr "TAGS: bioinformatics, java"
puts stderr "http://picard.sourceforge.net/"
}
module-whatis "Picard 1.64"
source $env(MODULEPATH)/.gui_warning
module load java
prereq java
prepend-path CLASSPATH /packages/picard/picard-tools-1.64/
module load lpsolve/5.5.2.0
Tags:
proc ModulesHelp { } {
puts stderr "lpsolve 5.5.2.0"
puts stderr "TAGS: matlab"
}
module-whatis "lpsolve 5.5.2.0"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/lpsolve/lpsolve-5.5.2.0/bin/
prepend-path LD_LIBRARY_PATH /packages/lpsolve/lpsolve-5.5.2.0/lib64/
module load matlab/R2007a
Tags:
proc ModulesHelp { } {
puts stderr "Matlab R2007a"
puts stderr "TAGS: matlab"
}
module-whatis "Matlab R2007a"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/MatlabR2007a/bin
prepend-path LD_LIBRARY_PATH /packages/MatlabR2007a/bin/glnxa64/
module load matlab/R2010a
Tags:
proc ModulesHelp { } {
puts stderr "Matlab R2010a"
puts stderr "TAGS: matlab"
}
module-whatis "Matlab R2010a"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/MatlabR2010a/bin
module load matlab/R2010b
Tags:
proc ModulesHelp { } {
puts stderr "Matlab R2010b"
puts stderr "TAGS: matlab"
}
module-whatis "Matlab R2010b"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/MatlabR2010b/bin
module load matlab/R2011a
Tags:
proc ModulesHelp { } {
puts stderr "Matlab R2011a"
puts stderr "TAGS: matlab"
}
module-whatis "Matlab R2011a"
source $env(MODULEPATH)/.gui_warning
module load cplex/12.3
prereq cplex/12.3
prepend-path PATH /packages/MatlabR2011a/bin
prepend-path LD_LIBRARY_PATH /packages/MatlabR2011a/bin/glnxa64/
module load matlab/R2011b
Tags:
proc ModulesHelp { } {
puts stderr "Matlab R2011b"
puts stderr "TAGS: matlab"
}
module-whatis "Matlab R2011b"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/MatlabR2011b/bin
prepend-path LD_LIBRARY_PATH /packages/MatlabR2011b/bin/glnxa64/
module load starp/2.6.2
Tags:
proc ModulesHelp { } {
puts stderr "Star-P 2.6.2 from ISC"
puts stderr "TAGS: matlab, parallelization libraries"
}
module-whatis "Star-P 2.6.2 from ISC"
prepend-path PATH /packages/starp/2.6.2/bin
module load tribs/3.0-meshbuilder
Tags:
proc ModulesHelp { } {
puts stderr "MeshBuilder"
puts stderr "TAGS: fluid dynamics, meshing"
}
module-whatis "MeshBuilder"
prepend-path PATH /packages/MeshBuilder
module load amber/10
URL: http://ambermd.org/
Tags:
proc ModulesHelp { } {
puts stderr "AmberTools 1.2 with Amber10 with gcc icc ifort mpif90 intel-mvapich-1.0.1"
puts stderr "TAGS: molecular dynamics"
puts stderr "URL: http://ambermd.org/"
}
module-whatis "AmberTools 1.2 with Amber10 with gcc icc ifort mpif90 intel-mvapich-1.0.1"
source $env(MODULEPATH)/.gui_warning
module load mvapich/1.0.1-intel
prereq mvapich/1.0.1-intel
setenv AMBERHOME /packages/amber10
setenv MPI_HOME /packages/intel-mvapich-1.0.1
prepend-path PATH /packages/amber10/bin
module load gromacs/4.0.4
Tags:
proc ModulesHelp { } {
puts stderr "Gromacs Version 4.0.4"
puts stderr "TAGS: molecular dynamics"
}
module-whatis "Gromacs Version 4.0.4"
source $env(MODULEPATH)/.gui_warning
module load mvapich/1.0.1-intel
prereq mvapich/1.0.1-intel
prepend-path LD_LIBRARY_PATH /packages/intel/mkl/10.0.2.018/lib/em64t
prepend-path GMXLIB /packages/gromacs-4.0.4/share/gromacs/top
prepend-path PATH /packages/gromacs-4.0.4/bin
module load gromacs/4.5.1
Tags:
proc ModulesHelp { } {
puts stderr "Gromacs Version 4.5.1"
puts stderr "TAGS: molecular dynamics"
}
module-whatis "Gromacs Version 4.5.1"
source $env(MODULEPATH)/.gui_warning
module load openmpi/1.4.2-gnu
prereq openmpi/1.4.2-gnu
prepend-path LD_LIBRARY_PATH /packages/fftw-3.2.2/lib64
prepend-path LD_LIBRARY_PATH /packages/gromacs-4.5.1/lib
prepend-path GMXLIB /packages/gromacs-4.5.1/share/gromacs/top
prepend-path INCLUDE /packages/fftw-3.2.2/include
prepend-path PATH /packages/fftw-3.2.2/bin:/packages/gromacs-4.5.1/bin
module load gromacs/4.5.3
Tags:
proc ModulesHelp { } {
puts stderr "Gromacs Version 4.5.3"
puts stderr "TAGS: molecular dynamics"
}
module-whatis "Gromacs Version 4.5.3"
source $env(MODULEPATH)/.gui_warning
module load openmpi/1.4.2-gnu
prereq openmpi/1.4.2-gnu
prepend-path LD_LIBRARY_PATH /packages/fftw-3.2.2/lib64
prepend-path LD_LIBRARY_PATH /packages/gromacs-4.5.3/lib
prepend-path GMXLIB /packages/gromacs-4.5.3/share/gromacs/top
prepend-path INCLUDE /packages/fftw-3.2.2/include
prepend-path PATH /packages/fftw-3.2.2/bin:/packages/gromacs-4.5.3/bin
module load gromacs/4.5.4
Tags:
proc ModulesHelp { } {
puts stderr "Gromacs Version 4.5.4"
puts stderr "TAGS: molecular dynamics"
}
module-whatis "Gromacs Version 4.5.4"
source $env(MODULEPATH)/.gui_warning
module load openmpi/1.4.2-gnu
prereq openmpi/1.4.2-gnu
prepend-path LD_LIBRARY_PATH /packages/fftw-3.2.2/lib64
prepend-path LD_LIBRARY_PATH /packages/gromacs/gromacs-4.5.4/lib
prepend-path GMXLIB /packages/gromacs/gromacs-4.5.4/share/gromacs/top
prepend-path INCLUDE /packages/fftw-3.2.2/include
prepend-path PATH /packages/fftw-3.2.2/bin:/packages/gromacs/gromacs-4.5.4/bin
module load namd/2.6
Tags:
proc ModulesHelp { } {
puts stderr "NAMD 2.6"
puts stderr "TAGS: molecular dynamics"
}
module-whatis "NAMD 2.6"
module load openmpi/1.2.7-gnu
prereq openmpi/1.2.7-gnu
prepend-path PATH /packages/NAMD-2.6
module load namd/2.7b1
Tags:
proc ModulesHelp { } {
puts stderr "NAMD 2.7b1"
puts stderr "TAGS: molecular dynamics"
}
module-whatis "NAMD 2.7b1"
module load mvapich/1.0.1-intel
prereq mvapich/1.0.1-intel
prepend-path PATH /packages/NAMD-2.7b1
module load vmd/1.8.7
Tags:
proc ModulesHelp { } {
puts stderr "vmd-1.8.7"
puts stderr "TAGS: molecular dynamics, visualization"
}
module-whatis "vmd-1.8.7"
prepend-path PATH /packages/vmd-1.8.7/bin
prepend-path LD_LIBRARY_PATH /packages/vmd-1.8.7/lib
module load intel-mpi/4.0
URL: http://software.intel.com/en-us/articles/intel-cluster-studio
Tags:
proc ModulesHelp { } {
puts stderr "Intel MPI Library 4.0.1.007 with Intel Compilers v12"
puts stderr "TAGS: mpi"
puts stderr "URL: http://software.intel.com/en-us/articles/intel-cluster-studio"
puts stderr {
Intel MPI uses mpirun rather than mpiexec. Additionally, you must specify the
number of CPUs to run on, it is not automatically determined. For example, run
this on a 16 cpu job:
mpirun -n 16 YourMPIBinary
The standard mpi compilation binaries mpicc, mpif90, etc use the GNU compilers
by default (gcc, gfortran, etc). If you wish you use the intel compilers you
must run mpiicc, mpiicpc, or mpiifort instead. You can also set an environment
variable to set a compiler manually as follows:
I_MPI_CC=icc mpicc ...
I_MPI_CXX=icpc mpicxx ...
I_MPI_F77=ifort mpif77 ...
I_MPI_F90=ifort mpif90 ...
}
}
module-whatis "Intel MPI Library 4.0.1.007 with Intel Compilers v12"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/12.0
prereq intel/12.0
prepend-path CLASSPATH /packages/intel-cs/itac/8.0.1.009/itac/lib_impi4
prepend-path I_MPI_ROOT /packages/intel-cs/impi/4.0.1.007
prepend-path LD_LIBRARY_PATH /packages/intel-cs/impi/4.0.1.007/lib64
prepend-path LD_LIBRARY_PATH /packages/intel-cs/itac/8.0.1.009/itac/slib_impi4
prepend-path MANPATH /packages/intel-cs/impi/4.0.1.007/man
prepend-path MANPATH /packages/intel-cs/itac/8.0.1.009/man
prepend-path PATH /packages/intel-cs/impi/4.0.1.007/bin64
prepend-path PATH /packages/intel-cs/itac/8.0.1.009/bin
setenv VT_ADD_LIBS "-ldwarf -lelf -lvtunwind -lnsl -lm -ldl -lpthread"
prepend-path VT_LIB_DIR /packages/intel-cs/itac/8.0.1.009/itac/lib_impi4
setenv VT_MPI "impi4"
prepend-path VT_ROOT /packages/intel-cs/itac/8.0.1.009
prepend-path VT_SLIB_DIR /packages/intel-cs/itac/8.0.1.009/itac/slib_impi4
module load mpiblast/1.5.0
Tags:
proc ModulesHelp { } {
puts stderr "mpiblast-1.5.0"
puts stderr "TAGS: mpi, bioinformatics"
}
module-whatis "mpiblast-1.5.0"
module load mvapich/1.0.1-intel
prereq mvapich/1.0.1-intel
prepend-path PATH /packages/mpiblast-1.5.0/bin
module load mvapich/1.0.1-gnu
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH 1.0.1 with the GNU compilers"
puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH 1.0.1 with the GNU compilers"
conflict mvapich mvapich2 openmpi intel-mpi
prepend-path PATH /packages/gcc-mvapich-1.0.1/bin:/packages/mpiexec-0.84b/bin
prepend-path LD_LIBRARY_PATH /packages/gcc-mvapich-1.0.1/lib:/packages/gcc-mvapich-1.0.1/lib/shared
module load mvapich/1.0.1-intel
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH 1.0.1 with the Intel Compilers v10"
puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH 1.0.1 with the Intel Compilers v10"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/10.1
prereq intel/10.1
prepend-path PATH /packages/intel-mvapich-1.0.1/bin:/packages/mpiexec-0.84b/bin
prepend-path LD_LIBRARY_PATH /packages/intel-mvapich-1.0.1/lib:/packages/intel-mvapich-1.0.1/lib/shared
module load mvapich/1.0.1-pgi
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH 1.0.1 with the PGI compilers (FORTRAN ONLY)"
puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH 1.0.1 with the PGI compilers (FORTRAN ONLY)"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/pgi-mvapich-1.0.1/bin:/packages/mpiexec-0.84b/bin
prepend-path MPI_INC /packages/pgi-mvapich-1.0.1/include
prepend-path MPI_LIB /packages/pgi-mvapich-1.0.1/lib
prepend-path LD_LIBRARY_PATH /packages/pgi-mvapich-1.0.1/lib
module load mvapich/1.1-intel
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH 1.1 compiled with the Intel 11.1 compilers"
puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH 1.1 compiled with the Intel 11.1 compilers"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/11.1
prereq intel/11.1
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/intel-mvapich-1.1/bin
prepend-path MANPATH /packages/intel-mvapich-1.1/share/man
prepend-path LD_LIBRARY_PATH /packages/intel-mvapich-1.1/lib/shared:/packages/intel-mvapich-1.1/lib
module load mvapich/1.1-gnu
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH 1.1 with the GNU compilers"
puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH 1.1 with the GNU compilers"
conflict mvapich mvapich2 openmpi intel-mpi
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/gcc-mvapich-1.1/bin
prepend-path MANPATH /packages/gcc-mvapich-1.1/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-mvapich-1.1/lib/shared:/packages/gcc-mvapich-1.1/lib
module load mvapich/1.1-pgi
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH 1.1 with the PGI compilers (FORTRAN ONLY)"
puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH 1.1 with the PGI compilers (FORTRAN ONLY)"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/pgi-mvapich-1.1/bin
prepend-path MANPATH /packages/pgi-mvapich-1.1/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-mvapich-1.1/lib/shared:/packages/pgi-mvapich-1.1/lib
module load mvapich2/1.2rc2-gnu
URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH2 1.2RC2 with the GNU compilers"
puts stderr "TAGS: mpi"
puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis "MVAPICH2 1.2RC2 with the GNU compilers"
conflict mvapich mvapich2 openmpi intel-mpi
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/gcc-mvapich2-1.2rc2/bin
prepend-path LD_LIBRARY_PATH /packages/gcc-mvapich2-1.2rc2/lib
set-alias "mpiexec" "mpiexec --comm=pmi"
module load mvapich2/1.2rc2-intel
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH2 1.2RC2 with the Intel Compilers v10"
puts stderr "TAGS: mpi"
}
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/10.1
prereq intel/10.1
module-whatis "MVAPICH2 1.2RC2 with the Intel Compilers v10"
prepend-path PATH /packages/intel-mvapich2-1.2rc2/bin:/packages/mpiexec-0.84b/bin
prepend-path LD_LIBRARY_PATH /packages/intel-mvapich2-1.2rc2/lib
module load mvapich2/1.5-intel
URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/
Tags:
proc ModulesHelp { } {
puts stderr "mvapich2 1.5 compiled with Intel v11"
puts stderr "TAGS: mpi"
puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis "mvapich2 1.5 compiled with Intel v11"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/11.1
prereq intel/11.1
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/intel-mvapich2-1.5/bin
prepend-path MANPATH /packages/intel-mvapich2-1.5/share/man
prepend-path LD_LIBRARY_PATH /packages/intel-mvapich2-1.5/lib
set-alias "mpiexec" "mpiexec --comm=pmi"
module load mvapich2/1.5-gnu
URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH2 1.5 with the GNU compilers"
puts stderr "TAGS: mpi"
puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis "MVAPICH2 1.5 with the GNU compilers"
conflict mvapich mvapich2 openmpi intel-mpi
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/gcc-mvapich2-1.5/bin
prepend-path MANPATH /packages/gcc-mvapich2-1.5/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-mvapich2-1.5/lib
set-alias "mpiexec" "mpiexec --comm=pmi"
module load mvapich2/1.5-gnu-debug
URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH2 1.5 with the GNU compilers - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis "MVAPICH2 1.5 with the GNU compilers - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/gcc-mvapich2-1.5-debugging/bin
prepend-path MANPATH /packages/gcc-mvapich2-1.5-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-mvapich2-1.5-debugging/lib
set-alias "mpiexec" "mpiexec --comm=pmi"
module load mvapich2/1.5-intel-debug
URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH2 1.5 with the Intel Compilers v11 - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis "MVAPICH2 1.5 with the Intel Compilers v11 - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/11.1
prereq intel/11.1
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/intel-mvapich2-1.5-debugging/bin
prepend-path MANPATH /packages/intel-mvapich2-1.5-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/intel-mvapich2-1.5-debugging/lib
set-alias "mpiexec" "mpiexec --comm=pmi"
module load mvapich2/1.5-pgi
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH2 1.5 with the PGI compilers (FORTRAN ONLY)"
puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH2 1.5 with the PGI compilers (FORTRAN ONLY)"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/pgi-mvapich2-1.5/bin
prepend-path MANPATH /packages/pgi-mvapich2-1.5/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-mvapich2-1.5/lib
set-alias "mpiexec" "mpiexec --comm=pmi"
module load mvapich2/1.5-pgi-debug
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH2 1.5 with the PGI compilers (FORTRAN ONLY) - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH2 1.5 with the PGI compilers (FORTRAN ONLY) - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/pgi-mvapich2-1.5-debugging/bin
prepend-path MANPATH /packages/pgi-mvapich2-1.5-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-mvapich2-1.5-debugging/lib
set-alias "mpiexec" "mpiexec --comm=pmi"
module load mvapich2/1.6-intel
URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/
Tags:
proc ModulesHelp { } {
puts stderr "mvapich2 1.6 compiled with Intel v12"
puts stderr "TAGS: mpi"
puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis "mvapich2 1.6 compiled with Intel v11"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/12.0
prereq intel/12.0
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/intel12-mvapich2-1.6/bin
prepend-path MANPATH /packages/intel12-mvapich2-1.6/share/man
prepend-path LD_LIBRARY_PATH /packages/intel12-mvapich2-1.6/lib
set-alias "mpiexec" "mpiexec --comm=pmi"
module load mvapich2/1.6-gnu
URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH2 1.6 with the GNU compilers"
puts stderr "TAGS: mpi"
puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis "MVAPICH2 1.6 with the GNU compilers"
conflict mvapich mvapich2 openmpi intel-mpi
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/gcc-mvapich2-1.6/bin
prepend-path MANPATH /packages/gcc-mvapich2-1.6/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-mvapich2-1.6/lib
set-alias "mpiexec" "mpiexec --comm=pmi"
module load mvapich2/1.6-gnu-debug
URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH2 1.6 with the GNU compilers - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis "MVAPICH2 1.6 with the GNU compilers - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/gcc-mvapich2-1.6-debugging/bin
prepend-path MANPATH /packages/gcc-mvapich2-1.6-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-mvapich2-1.6-debugging/lib
set-alias "mpiexec" "mpiexec --comm=pmi"
module load mvapich2/1.6-intel-debug
URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH2 1.6 with the Intel Compilers v12 - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
puts stderr "URL: http://mvapich.cse.ohio-state.edu/overview/mvapich2/"
}
module-whatis "MVAPICH2 1.6 with the Intel Compilers v12 - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/12.0
prereq intel/12.0
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/intel12-mvapich2-1.6-debugging/bin
prepend-path MANPATH /packages/intel12-mvapich2-1.6-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/intel12-mvapich2-1.6-debugging/lib
set-alias "mpiexec" "mpiexec --comm=pmi"
module load mvapich2/1.6-pgi
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH2 1.6 with the PGI compilers (FORTRAN ONLY)"
puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH2 1.6 with the PGI compilers (FORTRAN ONLY)"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/pgi-mvapich2-1.6/bin
prepend-path MANPATH /packages/pgi-mvapich2-1.6/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-mvapich2-1.6/lib
set-alias "mpiexec" "mpiexec --comm=pmi"
module load mvapich2/1.6-pgi-debug
Tags:
proc ModulesHelp { } {
puts stderr "MVAPICH2 1.6 with the PGI compilers (FORTRAN ONLY) - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
}
module-whatis "MVAPICH2 1.6 with the PGI compilers (FORTRAN ONLY) - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/mpiexec-0.84b/bin:/packages/pgi-mvapich2-1.6-debugging/bin
prepend-path MANPATH /packages/pgi-mvapich2-1.6-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-mvapich2-1.6-debugging/lib
set-alias "mpiexec" "mpiexec --comm=pmi"
module load openmpi/1.2.7-gnu
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.2.7 compiled with the GNU Compilers"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.2.7 compiled with the GNU Compilers"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/10.1
prereq intel/10.1
prepend-path PATH /packages/gcc-openmpi-1.2.7/bin
prepend-path MANPATH /packages/gcc-openmpi-1.2.7/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-openmpi-1.2.7/lib
module load openmpi/1.2.7-intel
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.2.7 with the Intel Compilers v10"
puts stderr "TAGS: mpi"
}
module-whatis "OpenMPI 1.2.7 with the Intel Compilers v10"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/10.1
prereq intel/10.1
prepend-path PATH /packages/intel-openmpi-1.2.7/bin
prepend-path MANPATH /packages/intel-openmpi-1.2.7/share/man
prepend-path LD_LIBRARY_PATH /packages/intel-openmpi-1.2.7/lib
module load openmpi/1.2.7-pgi
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.2.7 with the PGI compilers (FORTRAN ONLY)"
puts stderr "TAGS: mpi"
}
module-whatis "OpenMPI 1.2.7 with the PGI compilers (FORTRAN ONLY)"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/pgi-openmpi-1.2.7/bin
prepend-path MANPATH /packages/pgi-openmpi-1.2.7/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-openmpi-1.2.7/lib
module load openmpi/1.4.2-intel
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.2"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.2 compiled with Intel v11"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/11.1
prereq intel/11.1
prepend-path PATH /packages/intel-openmpi-1.4.2/bin
prepend-path MANPATH /packages/intel-openmpi-1.4.2/share/man
prepend-path LD_LIBRARY_PATH /packages/intel-openmpi-1.4.2/lib
module load openmpi/1.4.2-gnu
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.2 compiled with the GNU Compilers"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.2 compiled with the GNU Compilers"
conflict mvapich mvapich2 openmpi intel-mpi
prepend-path PATH /packages/gcc-openmpi-1.4.2/bin
prepend-path MANPATH /packages/gcc-openmpi-1.4.2/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-openmpi-1.4.2/lib
module load openmpi/1.4.2-gnu-debug
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.2 with GCC Compilers and MPE2 - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
}
module-whatis "OpenMPI 1.4.2 with GCC Compilers and MPE2 - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
prepend-path PATH /packages/gcc-openmpi-1.4.2-debugging/bin
prepend-path MANPATH /packages/gcc-openmpi-1.4.2-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-openmpi-1.4.2-debugging/lib
module load openmpi/1.4.2-intel-debug
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.2 with the Intel Compilers v11 and MPE2 - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
}
module-whatis "OpenMPI 1.4.2 with the Intel Compilers v11 and MPE2 - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/11.1
prereq intel/11.1
prepend-path PATH /packages/intel-openmpi-1.4.2-debugging/bin
prepend-path MANPATH /packages/intel-openmpi-1.4.2-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/intel-openmpi-1.4.2-debugging/lib
module load openmpi/1.4.2-pgi
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.2 with the PGI Compilers (FORTRAN ONLY)"
puts stderr "TAGS: mpi"
}
module-whatis "OpenMPI 1.4.2 with the PGI Compilers (FORTRAN ONLY)"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/pgi-openmpi-1.4.2/bin
prepend-path MANPATH /packages/pgi-openmpi-1.4.2/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-openmpi-1.4.2/lib
module load openmpi/1.4.2-pgi-debug
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.2 with the PGI Compilers (FORTRAN ONLY) - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
}
module-whatis "OpenMPI 1.4.2 with the PGI Compilers (FORTRAN ONLY) - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/pgi-openmpi-1.4.2-debugging/bin
prepend-path MANPATH /packages/pgi-openmpi-1.4.2-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-openmpi-1.4.2-debugging/lib
module load openmpi/1.4.3-gnu
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.3 with GNU Compilers"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.3 compiled with GNU 4.1.2"
conflict mvapich mvapich2 openmpi intel-mpi
prepend-path PATH /packages/gcc-openmpi-1.4.3/bin
prepend-path MANPATH /packages/gcc-openmpi-1.4.3/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-openmpi-1.4.3/lib
module load openmpi/1.4.3-intel
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.3 compiled with Intel v12"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.3 compiled with Intel v12"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/12.0
prereq intel/12.0
prepend-path PATH /packages/intel12-openmpi-1.4.3/bin
prepend-path MANPATH /packages/intel12-openmpi-1.4.3/share/man
prepend-path LD_LIBRARY_PATH /packages/intel12-openmpi-1.4.3/lib
module load openmpi/1.4.3-pgi
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.3 compiled with PGI 7.0 Fortran compilers"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.3 compiled with PGI 7.0 Fortran compilers"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prepend-path PATH /packages/pgi-openmpi-1.4.3/bin
prepend-path MANPATH /packages/pgi-openmpi-1.4.3/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-openmpi-1.4.3/lib
module load openmpi/1.4.3-gnu-debug
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.3 with GNU Compilers and MPE2 - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.3 with GNU Compilers and MPE2 - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
prepend-path PATH /packages/gcc-openmpi-1.4.3-debugging/bin
prepend-path MANPATH /packages/gcc-openmpi-1.4.3-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/gcc-openmpi-1.4.3-debugging/lib
module load openmpi/1.4.3-intel-debug
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.3 with the Intel Compilers v12 and MPE2 - DEBUGGING ONLY"
puts stderr "OpenMPI 1.4.3 compiled with Intel v12 - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.3 with the Intel Compilers v12 and MPE2 - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/12.0
prereq intel/12.0
prepend-path PATH /packages/intel12-openmpi-1.4.3-debugging/bin
prepend-path MANPATH /packages/intel12-openmpi-1.4.3-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/intel12-openmpi-1.4.3-debugging/lib
module load openmpi/1.4.3-pgi-debug
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.3 with the PGI Compilers (FORTRAN ONLY) - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
}
module-whatis "OpenMPI 1.4.3 with the PGI Compilers (FORTRAN ONLY) - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/pgi-openmpi-1.4.3-debugging/bin
prepend-path MANPATH /packages/pgi-openmpi-1.4.3-debugging/share/man
prepend-path LD_LIBRARY_PATH /packages/pgi-openmpi-1.4.3-debugging/lib
module load openmpi/1.4.5-gnu-4.1.2
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.5 with version 4.1.2 of the GNU compilers"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.5 compiled with GNU 4.1.2"
conflict mvapich mvapich2 openmpi intel-mpi
prepend-path PATH /packages/openmpi/1.4.5/gcc/4.1.2/normal/bin
prepend-path MANPATH /packages/openmpi/1.4.5/gcc/4.1.2/normal/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/gcc/4.1.2/normal/lib
module load openmpi/1.4.5-gnu-4.1.2-debug
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.5 with version 4.1.2 of the GNU compilers and MPE2 - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.5 compiled with GNU 4.1.2 and MPE2 - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
prepend-path PATH /packages/openmpi/1.4.5/gcc/4.1.2/debug/bin
prepend-path MANPATH /packages/openmpi/1.4.5/gcc/4.1.2/debug/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/gcc/4.1.2/debug/lib
module load openmpi/1.4.5-gnu-4.6.3
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.5 with version 4.6.3 of the GNU compilers"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.5 compiled with GNU 4.6.3"
conflict mvapich mvapich2 openmpi intel-mpi
module load gcc/4.6.3
prereq gcc/4.6.3
prepend-path PATH /packages/openmpi/1.4.5/gcc/4.6.3/normal/bin
prepend-path MANPATH /packages/openmpi/1.4.5/gcc/4.6.3/normal/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/gcc/4.6.3/normal/lib
module load openmpi/1.4.5-gnu-4.6.3-debug
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.5 with version 4.6.3 of the GNU compilers and MPE2 - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.5 compiled with GNU 4.6.3 and MPE2 - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load gcc/4.6.3
prereq gcc/4.6.3
prepend-path PATH /packages/openmpi/1.4.5/gcc/4.6.3/debug/bin
prepend-path MANPATH /packages/openmpi/1.4.5/gcc/4.6.3/debug/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/gcc/4.6.3/debug/lib
module load openmpi/1.4.5-intel
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.5 compiled with Intel v12"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.5 compiled with Intel v12"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/12.0
prereq intel/12.0
prepend-path PATH /packages/openmpi/1.4.5/intel/12.0/normal/bin
prepend-path MANPATH /packages/openmpi/1.4.5/intel/12.0/normal/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/intel/12.0/normal/lib
module load openmpi/1.4.5-intel-12.1
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.5 compiled with Intel v12.1"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.5 compiled with Intel v12.1"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/12.1
prereq intel/12.1
prepend-path PATH /packages/openmpi/1.4.5/intel/12.1/normal/bin
prepend-path MANPATH /packages/openmpi/1.4.5/intel/12.1/normal/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/intel/12.1/normal/lib
module load openmpi/1.4.5-pgi
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.5 compiled with PGI 7.0 Fortran compilers"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.5 compiled with PGI 7.0 Fortran compilers"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prepend-path PATH /packages/openmpi/1.4.5/pgi/7.0/normal/bin
prepend-path MANPATH /packages/openmpi/1.4.5/pgi/7.0/normal/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/pgi/7.0/normal/lib
module load openmpi/1.4.5-solaris
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.5 compiled with Solaris Studio 12.3 (NOT FOR PRODUCTION USE)"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.5 compiled with Solaris Studio 12.3 (NOT FOR PRODUCTION USE)"
conflict mvapich mvapich2 openmpi intel-mpi
module load solarisstudio/12.3
prereq solarisstudio/12.3
prepend-path PATH /packages/openmpi/1.4.5/solaris/12.3/normal/bin
prepend-path MANPATH /packages/openmpi/1.4.5/solaris/12.3/normal/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/solaris/12.3/normal/lib
module load openmpi/1.4.5-intel-debug
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.5 compiled with Intel v12 and MPE2 - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.5 with the Intel Compilers v12 and MPE2 - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load intel/12.0
prereq intel/12.0
prepend-path PATH /packages/openmpi/1.4.5/intel/12.0/debug/bin
prepend-path MANPATH /packages/openmpi/1.4.5/intel/12.0/debug/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/intel/12.0/debug/lib
module load openmpi/1.4.5-pgi-debug
Tags:
proc ModulesHelp { } {
puts stderr "OpenMPI 1.4.5 with the PGI Compilers (FORTRAN ONLY) - DEBUGGING ONLY"
puts stderr "TAGS: mpi"
puts stderr "URL: http://www.open-mpi.org/"
}
module-whatis "OpenMPI 1.4.5 with the PGI Compilers (FORTRAN ONLY) - DEBUGGING ONLY"
conflict mvapich mvapich2 openmpi intel-mpi
module load pgi/7.0
prepend-path PATH /packages/openmpi/1.4.5/pgi/7.0/debug/bin
prepend-path MANPATH /packages/openmpi/1.4.5/pgi/7.0/debug/share/man
prepend-path LD_LIBRARY_PATH /packages/openmpi/1.4.5/pgi/7.0/debug/lib
module load ncview/1.93g
URL: http://meteora.ucsd.edu/~pierce/ncview_home_page.html
Tags:
proc ModulesHelp { } {
puts stderr "ncview-1.93g"
puts stderr "TAGS: netcdf, visualization"
puts stderr "url: http://meteora.ucsd.edu/~pierce/ncview_home_page.html"
}
module-whatis "ncview-1.93g"
prepend-path PATH /packages/ncview-1.93g/bin
prepend-path MANPATH /packages/ncview-1.93g/man
module load netcdf/3.6.3-gnu
Tags:
proc ModulesHelp { } {
puts stderr "Network Common Data Form version 3.6.3 for gnu compilers"
puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
}
module-whatis "Network Common Data Form version 3.6.3 for gnu compilers"
prepend-path PATH /packages/netcdf-3.6.3-gnu/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-3.6.3-gnu/lib
prepend-path NETCDF /packages/netcdf-3.6.3-gnu
prepend-path INCLUDE /packages/netcdf-3.6.3-gnu/include
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"
module load netcdf/3.6.3-pgi
Tags:
proc ModulesHelp { } {
puts stderr "Network Common Data Form version 3.6.3 for pgi compilers"
puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
}
module-whatis "Network Common Data Form version 3.6.3 for pgi compilers"
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/netcdf-3.6.3/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-3.6.3/lib
prepend-path NETCDF /packages/netcdf-3.6.3
module load netcdf/4.0.1-gnu
Tags:
proc ModulesHelp { } {
puts stderr "Network Common Data Form version 4.0.1 for gnu compilers"
puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
}
module-whatis "Network Common Data Form version 4.0.1 for gnu compilers"
prepend-path PATH /packages/netcdf-4.0.1-gnu/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-4.0.1-gnu/lib
prepend-path NETCDF /packages/netcdf-4.0.1-gnu
prepend-path INCLUDE /packages/netcdf-4.0.1-gnu/include
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"
module load netcdf/4.0.1-intel
URL: http://www.unidata.ucar.edu/software/netcdf/
Tags:
proc ModulesHelp { } {
puts stderr "Network Common Data Form version 4.0.1 for intel compilers"
puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
puts stderr "url: http://www.unidata.ucar.edu/software/netcdf/"
}
module-whatis "Network Common Data Form version 4.0.1 for intel compilers"
module load intel/11.1
prereq intel/11.1
prepend-path PATH /packages/netcdf-4.0.1/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-4.0.1/lib
prepend-path NETCDF /packages/netcdf-4.0.1
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"
module load netcdf/4.0.1-pgi
URL: http://www.unidata.ucar.edu/software/netcdf/
Tags:
proc ModulesHelp { } {
puts stderr "Network Common Data Form version 4.0.1 for pgi compiler"
puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
puts stderr "url: http://www.unidata.ucar.edu/software/netcdf/"
}
module-whatis "Network Common Data Form version 4.0.1 for pgi compiler"
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/netcdf-4.0.1-pgi/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-4.0.1-pgi/lib
prepend-path NETCDF /packages/netcdf-4.0.1-pgi
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"
module load neuron/6.0.4
URL: http://www.neuron.yale.edu/neuron/
Tags:
proc ModulesHelp { } {
puts stderr "Neuron Simulation Software"
puts stderr "TAGS: neural networks"
puts stderr "URL: http://www.neuron.yale.edu/neuron/"
}
module-whatis "Neuron Simulation Software"
module load mvapich/1.0.1-gnu
prereq mvapich/1.0.1-gnu
prepend-path PATH /packages/neuron/iv/x86_64/bin/:/packages/neuron/nrn/x86_64/bin/
prepend-path LD_LIBRARY_PATH /packages/neuron/iv/x86_64/lib/:/packages/neuron/nrn/x86_64/lib/
module load arpack/96
URL: http://www.caam.rice.edu/software/ARPACK/
Tags:
proc ModulesHelp { } {
puts stderr "ARPACK / PARPACK compiled with mvapich/1.1-intel"
puts stderr "TAGS: numerical libraries"
puts stderr "URL: http://www.caam.rice.edu/software/ARPACK/"
}
module-whatis "ARPACK / PARPACK compiled with mvapich/1.1-intel"
source $env(MODULEPATH)/.gui_warning
prepend-path LD_LIBRARY_PATH /packages/ARPACK/lib
module load atlas/3.8.3
Tags:
proc ModulesHelp { } {
puts stderr "atlas-3.8.3"
puts stderr "TAGS: numerical libraries"
}
module-whatis "atlas-3.8.3"
prepend-path LD_LIBRARY_PATH /packages/ATLAS-3.8.3
module load fftw/2.1.5-openmpi
Tags:
proc ModulesHelp { } {
puts stderr "FFTW Version 2.1.5 w/gcc, openmpi-1.2.7, fortran"
puts stderr "TAGS: numerical libraries"
}
module-whatis "FFTW Version 2.1.5 w/gcc, openmpi-1.2.7, fortran"
module load openmpi/1.2.7-gnu
prereq openmpi/1.2.7-gnu
prepend-path INCLUDE /packages/fftw-2.1.5/include
prepend-path LD_LIBRARY_PATH /packages/fftw-2.1.5/lib
module load fftw/3.2.2-openmpi
Tags:
proc ModulesHelp { } {
puts stderr "FFTW Version 3.2.2 w/gcc, openmpi-1.4.2, fortran"
puts stderr "TAGS: numerical libraries"
}
module-whatis "FFTW Version 3.2.2 w/gcc, openmpi-1.4.2, fortran"
module load openmpi/1.4.2-gnu
prereq openmpi/1.4.2-gnu
prepend-path INCLUDE /packages/fftw-3.2.2/include
prepend-path LD_LIBRARY_PATH /packages/fftw-3.2.2/lib64
prepend-path PATH /packages/fftw-3.2.2/bin
module load gmp/4.3.2
Tags:
proc ModulesHelp { } {
puts stderr "GMP - GNU Multiple Precision Arithmetic Library - 4.3.2 (Compiled with GCC 4.4.x)"
puts stderr "TAGS: numerical libraries"
}
module-whatis "GMP - GNU Multiple Precision Arithmetic Library - 4.3.2 (Compiled with GCC 4.4.x)"
source $env(MODULEPATH)/.gui_warning
module load gcc/4.4.0
prereq gcc/4.4.0
prepend-path INCLUDE /packages/gmp/gmp-4.3.2/include
prepend-path LD_LIBRARY_PATH /packages/gmp/gmp-4.3.2/lib
module load gmp/5.0.1
Tags:
proc ModulesHelp { } {
puts stderr "GMP - GNU Multiple Precision Arithmetic Library - 5.0.1 (Compiled with GCC 4.4.x)"
puts stderr "TAGS: numerical libraries"
}
module-whatis "GMP - GNU Multiple Precision Arithmetic Library - 5.0.1 (Compiled with GCC 4.4.x)"
source $env(MODULEPATH)/.gui_warning
module load gcc/4.4.0
prereq gcc/4.4.0
prepend-path INCLUDE /packages/gmp/gmp-5.0.1/include
prepend-path LD_LIBRARY_PATH /packages/gmp/gmp-5.0.1/lib
module load gsl/1.12
Tags:
proc ModulesHelp { } {
puts stderr "GNU Scientific Library version 1.12"
puts stderr "TAGS: scientific libraries, numerical libraries"
}
module-whatis "GNU Scientific Library version 1.12"
prepend-path PATH /packages/gsl/bin
prepend-path LD_LIBRARY_PATH /packages/gsl/lib
prepend-path LIBDIR /packages/gsl/lib
module load gotoblas/1.26
URL: http://www.tacc.utexas.edu/tacc-projects/gotoblas2
Tags:
proc ModulesHelp { } {
puts stderr "GotoBLAS version 1.26 from TACC"
puts stderr "URL: http://www.tacc.utexas.edu/tacc-projects/gotoblas2"
puts stderr "TAGS: numerical libraries"
}
module-whatis "GotoBLAS version 1.26"
setenv GOTO_LIB /packages/GotoBLAS-1.26
prepend-path LD_LIBRARY_PATH /packages/GotoBLAS-1.26
setenv GOTO_NUM_THEADS "1"
module load lapack/3.2.2
Tags:
proc ModulesHelp { } {
puts stderr "lapack-3.2.2"
puts stderr "TAGS: numerical libraries"
}
module-whatis "lapack-3.2.2"
prepend-path PATH /packages/lapack-3.2.2
prepend-path LD_LIBRARY_PATH /packages/lapack-3.2.2
module load numpy/1.3.0rc2
Tags:
proc ModulesHelp { } {
puts stderr "numpy-1.3.0rc2"
puts stderr "TAGS: python, numerical libraries"
}
module-whatis "numpy-1.3.0rc2"
module load intel/10.1
prereq intel/10.1
prepend-path PATH /packages/numpy-1.3.0rc2/bin
prepend-path LD_LIBRARY_PATH /packages/numpy-1.3.0rc2/lib64
prepend-path PYTHONPATH /packages/numpy-1.3.0rc2/lib64/python2.4/site-packages
module load numpy/1.5.1
Tags:
proc ModulesHelp { } {
puts stderr "numpy-1.5.1 compiled with Python 2.7 and Intel MKL"
puts stderr "TAGS: python, numerical libraries"
}
module-whatis "numpy-1.5.1 compiled with Python 2.7 and Intel MKL"
module load intel/12.0
prereq intel/12.0
module load python/2.7
prereq python/2.7
prepend-path PATH /packages/numpy-1.5.1/bin
prepend-path LD_LIBRARY_PATH /packages/numpy-1.5.1/lib
prepend-path PYTHONPATH /packages/numpy-1.5.1/lib/python
module load plapack/3.2
URL: http://www.cs.utexas.edu/~plapack/
Tags:
proc ModulesHelp { } {
puts stderr "plapack-3.2"
puts stderr "TAGS: numerical libraries"
puts stderr "URL: http://www.cs.utexas.edu/~plapack/"
}
module-whatis "plapack-3.2"
prepend-path LD_LIBRARY_PATH /packages/PLAPACK-3.2
module load pymvpa/0.4.5
Tags:
proc ModulesHelp { } {
puts stderr "pymvpa-0.4.5"
puts stderr "TAGS: python, numerical libraries"
}
module-whatis "pymvpa-0.4.5"
module load numpy/1.3.0rc2
prereq numpy/1.3.0rc2
prepend-path PATH /packages/pymvpa-0.4.5/bin
prepend-path LD_LIBRARY_PATH /packages/pymvpa-0.4.5/lib64
prepend-path PYTHONPATH /packages/pymvpa-0.4.5/lib64/python
module load sprng/4.0
Tags:
proc ModulesHelp { } {
puts stderr "SPRNG 4 with gcc-openmpi-1.2.7"
puts stderr "TAGS: pseudorandom, numerical libraries"
puts stderr "URL: http://sprng.cs.fsu.edu/"
}
module-whatis "SPRNG 4 with gcc-openmpi-1.2.7"
module load openmpi/1.2.7-gnu
prereq openmpi/1.2.7-gnu
prepend-path PATH /packages/sprng/bin
prepend-path LD_LIBRARY_PATH /packages/sprng/lib
module load octave/3.2.4
Tags:
proc ModulesHelp { } {
puts stderr "octave-3.2.4"
puts stderr "TAGS: octave"
}
module-whatis "octave-3.2.4"
source $env(MODULEPATH)/.gui_warning
module load gnuplot/4.2.6
prereq gnuplot/4.2.6
prepend-path PATH /packages/octave-3.2.4/bin
prepend-path PATH /packages/octave-3.2.4/hdf5/bin
prepend-path LD_LIBRARY_PATH /packages/octave-3.2.4/lib/octave-3.2.4
prepend-path LD_LIBRARY_PATH /packages/octave-3.2.4/hdf5/lib64
prepend-path INCLUDE /packages/octave-3.2.4/hdf5/include
prepend-path MANPATH /packages/octave-3.2.4/share/man
module load octave/3.4.0
Tags:
proc ModulesHelp { } {
puts stderr "octave-3.4.0"
puts stderr "TAGS: octave"
}
module-whatis "octave-3.4.0"
source $env(MODULEPATH)/.gui_warning
module load gnuplot/4.2.6
prereq gnuplot/4.2.6
prepend-path PATH /packages/octave-3.4.0/bin
prepend-path PATH /packages/octave-3.4.0/hdf5/bin
prepend-path LD_LIBRARY_PATH /packages/octave-3.4.0/lib/octave-3.4.0
prepend-path LD_LIBRARY_PATH /packages/octave-3.4.0/hdf5/lib64
prepend-path INCLUDE /packages/octave-3.4.0/hdf5/include
prepend-path MANPATH /packages/octave-3.4.0/share/man
module load starp/2.6.2
Tags:
proc ModulesHelp { } {
puts stderr "Star-P 2.6.2 from ISC"
puts stderr "TAGS: matlab, parallelization libraries"
}
module-whatis "Star-P 2.6.2 from ISC"
prepend-path PATH /packages/starp/2.6.2/bin
module load cnv-seq/0.2-7
Tags:
proc ModulesHelp { } {
puts stderr "CNV-seq-0.2-7"
puts stderr "TAGS: bioinformatics, phylogenetics"
}
module-whatis "CNV-seq-0.2-7"
module load r/2.11.1
prereq r/2.11.1
prepend-path PATH /packages/R-2.11.1/cnv-seq
module load mrbayes/3.1.2
Tags:
proc ModulesHelp { } {
puts stderr "mrbayes-3.1.2 serial and parallel w/gcc-mvapich-1.0.1"
puts stderr "TAGS: bioinformatics, phylogenetics"
}
module-whatis "mrbayes-3.1.2 serial and parallel w/gcc-mvapich-1.0.1"
module load mvapich/1.0.1-gnu
prereq mvapich/1.0.1-gnu
prepend-path PATH /packages/mrbayes-3.1.2/bin
module load paml/4.4d
Tags:
proc ModulesHelp { } {
puts stderr "paml 4.4d Phylogenetic Analysis by Maximum Likelihood"
puts stderr "TAGS: bioinformatics, phylogenetics"
}
module-whatis "paml 4.4d"
prepend-path PATH /packages/paml44/bin
module load velvet/1.0.01
Tags:
proc ModulesHelp { } {
puts stderr "velvet-1.0.01"
puts stderr "TAGS: bioinformatics, phylogenetics"
}
module-whatis "velvet-1.0.01"
prepend-path PATH /packages/velvet-1.0.01
module load sprng/4.0
Tags:
proc ModulesHelp { } {
puts stderr "SPRNG 4 with gcc-openmpi-1.2.7"
puts stderr "TAGS: pseudorandom, numerical libraries"
puts stderr "URL: http://sprng.cs.fsu.edu/"
}
module-whatis "SPRNG 4 with gcc-openmpi-1.2.7"
module load openmpi/1.2.7-gnu
prereq openmpi/1.2.7-gnu
prepend-path PATH /packages/sprng/bin
prepend-path LD_LIBRARY_PATH /packages/sprng/lib
module load ngcgh/0.1.2
Tags:
proc ModulesHelp { } {
puts stderr "ngCGH-0.1.2"
puts stderr "TAGS: python"
}
module-whatis "ngCGH-0.1.2"
source $env(MODULEPATH)/.gui_warning
module load python/2.7
prereq python/2.7
module load numpy/1.3.0rc2
Tags:
proc ModulesHelp { } {
puts stderr "numpy-1.3.0rc2"
puts stderr "TAGS: python, numerical libraries"
}
module-whatis "numpy-1.3.0rc2"
module load intel/10.1
prereq intel/10.1
prepend-path PATH /packages/numpy-1.3.0rc2/bin
prepend-path LD_LIBRARY_PATH /packages/numpy-1.3.0rc2/lib64
prepend-path PYTHONPATH /packages/numpy-1.3.0rc2/lib64/python2.4/site-packages
module load numpy/1.5.1
Tags:
proc ModulesHelp { } {
puts stderr "numpy-1.5.1 compiled with Python 2.7 and Intel MKL"
puts stderr "TAGS: python, numerical libraries"
}
module-whatis "numpy-1.5.1 compiled with Python 2.7 and Intel MKL"
module load intel/12.0
prereq intel/12.0
module load python/2.7
prereq python/2.7
prepend-path PATH /packages/numpy-1.5.1/bin
prepend-path LD_LIBRARY_PATH /packages/numpy-1.5.1/lib
prepend-path PYTHONPATH /packages/numpy-1.5.1/lib/python
module load pymvpa/0.4.5
Tags:
proc ModulesHelp { } {
puts stderr "pymvpa-0.4.5"
puts stderr "TAGS: python, numerical libraries"
}
module-whatis "pymvpa-0.4.5"
module load numpy/1.3.0rc2
prereq numpy/1.3.0rc2
prepend-path PATH /packages/pymvpa-0.4.5/bin
prepend-path LD_LIBRARY_PATH /packages/pymvpa-0.4.5/lib64
prepend-path PYTHONPATH /packages/pymvpa-0.4.5/lib64/python
module load python/2.6.7
Tags:
proc ModulesHelp { } {
puts stderr "python-2.6.7"
puts stderr "TAGS: python"
}
module-whatis "python-2.6.7"
prepend-path PATH /packages/python/python-2.6.7/bin
prepend-path LD_LIBRARY_PATH /packages/python/python-2.6.7/lib
prepend-path MANPATH /packages/python/python-2.6.7/share/man/
prepend-path PYTHONPATH /packages/python/python-2.6.7
module load python/2.7
Tags:
proc ModulesHelp { } {
puts stderr "python-2.7"
puts stderr "TAGS: python"
}
module-whatis "python-2.7"
prepend-path PATH /packages/python-2.7/bin
prepend-path LD_LIBRARY_PATH /packages/python-2.7/lib
prepend-path MANPATH /packages/python-2.7/share/man
prepend-path PYTHONPATH /packages/python-2.7
module load python/2.7.2
Tags:
proc ModulesHelp { } {
puts stderr "python-2.7.2"
puts stderr "TAGS: python"
}
module-whatis "python-2.7.2"
prepend-path PATH /packages/python/python-2.7.2/bin
prepend-path LD_LIBRARY_PATH /packages/python/python-2.7.2/lib
prepend-path MANPATH /packages/python/python-2.7.2/share/man/
prepend-path PYTHONPATH /packages/python/python-2.7.2
module load python/3.1.2
Tags:
proc ModulesHelp { } {
puts stderr "python-3.1.2"
puts stderr "TAGS: python"
}
module-whatis "python-3.1.2"
prepend-path PATH /packages/python-3.1.2/bin
prepend-path LD_LIBRARY_PATH /packages/python-3.1.2/lib
prepend-path MANPATH /packages/python-3.1.2/share/man
prepend-path PYTHONPATH /packages/python-3.1.2
module load python/3.2
Tags:
proc ModulesHelp { } {
puts stderr "python-3.2"
puts stderr "TAGS: python"
}
module-whatis "python-3.2"
prepend-path PATH /packages/python/python-3.2/bin
prepend-path LD_LIBRARY_PATH /packages/python/python-3.2/lib
prepend-path MANPATH /packages/python/python-3.2/share/man/
prepend-path PYTHONPATH /packages/python/python-3.2
module load scipy/0.10.0-r7012
Tags:
proc ModulesHelp { } {
puts stderr "scipy-0.10.0 svn revision 7012 built with numpy-1.5.1"
puts stderr "TAGS: scientific libraries, python"
}
module-whatis "scipy-0.10.0 svn revision 7012 built with numpy-1.5.1"
module load numpy/1.5.1
prereq numpy/1.5.1
prepend-path LD_LIBRARY_PATH /packages/scipy-0.10.0.dev7012/lib
prepend-path PYTHONPATH /packages/scipy-0.10.0.dev7012/lib/python
module load scipy/0.7.1
Tags:
proc ModulesHelp { } {
puts stderr "scipy-0.7.1"
puts stderr "TAGS: scientific libraries, python"
}
module-whatis "scipy-0.7.1"
module load intel/10.1
prereq intel/10.1
prepend-path PATH /packages/scipy-0.7.1/bin
prepend-path LD_LIBRARY_PATH /packages/scipy-0.7.1/lib64
prepend-path PYTHONPATH /packages/scipy-0.7.1/lib64/python2.4/site-packages
module load gaussian/03e.01
Tags:
proc ModulesHelp { } {
puts stderr "Gaussian 03a.01"
puts stderr "TAGS: quantum, solid state"
}
module-whatis "Gaussian 03a.01"
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/gaussian-03e.01/g03/bsd:/packages/gaussian-03e.01/g03/private:/packages/gaussian-03e.01/g03
prepend-path LD_LIBRARY_PATH /packages/gaussian-03e.01/g03/bsd:/packages/gaussian-03e.01/g03/private:/packages/gaussian-03e.01/g03
setenv F_ERROPT1 "271,271,2,1,2,2,2,2"
setenv G03BASIS /packages/gaussian-03e.01/g03/basis
setenv g03root /packages/gaussian-03e.01
setenv GAUSS_ARCHDIR /packages/gaussian-03e.01/g03/arch
setenv GAUSS_EXEDIR /packages/gaussian-03e.01/g03/bsd:/packages/gaussian-03e.01/g03/private:/packages/gaussian-03e.01/g03
setenv GAUSS_LEXEDIR /packages/gaussian-03e.01/g03/linda-exe
setenv GMAIN /packages/gaussian-03e.01/g03/bsd:/packages/gaussian-03e.01/g03/private:/packages/gaussian-03e.01/g03
setenv gr /packages/gaussian-03e.01
setenv KMP_DUPLICATE_LIB_OK "TRUE"
setenv MP_STACK_OVERFLOW "OFF"
setenv TRAP_FPE "OVERFL=ABORT;DIVZERO=ABORT;INT_OVERFL=ABORT"
if { [info exists env(PBS_O_WORKDIR) ] } {
setenv GAUSS_SCRDIR $env(PBS_O_WORKDIR)
} else {
setenv GAUSS_SCRDIR ""
}
module load gaussian/g09
Tags:
proc ModulesHelp { } {
puts stderr "Gaussian g09"
puts stderr "TAGS: quantum, solid state"
}
module-whatis "Gaussian g09"
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/gaussian/g09/bsd:/packages/gaussian/g09/private:/packages/gaussian/g09
prepend-path LD_LIBRARY_PATH /packages/gaussian/g09/bsd:/packages/gaussian/g09/private:/packages/gaussian/g09
setenv F_ERROPT1 "271,271,2,1,2,2,2,2"
setenv G09BASIS /packages/gaussian/g09/basis
setenv g09root /packages/gaussian/g09
setenv GAUSS_ARCHDIR /packages/gaussian/g09/arch
setenv GAUSS_EXEDIR /packages/gaussian/g09/bsd:/packages/gaussian/g09/private:/packages/gaussian/g09
setenv GAUSS_LEXEDIR /packages/gaussian/g09/linda-exe
setenv GMAIN /packages/gaussian/g09/bsd:/packages/gaussian/g09/private:/packages/gaussian/g09
setenv gr /packages/gaussian/g09
setenv KMP_DUPLICATE_LIB_OK "TRUE"
setenv MP_STACK_OVERFLOW "OFF"
setenv TRAP_FPE "OVERFL=ABORT;DIVZERO=ABORT;INT_OVERFL=ABORT"
if { [info exists env(PBS_O_WORKDIR) ] } {
setenv GAUSS_SCRDIR $env(PBS_O_WORKDIR)
} else {
setenv GAUSS_SCRDIR ""
}
module load ruby/rvm
Tags:
proc ModulesHelp { } {
puts stderr {Ruby Version Manager with 1.8.7 and 1.9.2
TAGS: ruby
To switch between different versions of ruby, run "rvm 1.8.7" or "rvm 1.9.2"
}
}
module-whatis "Ruby Version Manager with 1.8.7 and 1.9.2"
setenv rvm_path /packages/rvm/rvm
setenv rvm_prefix /packages/rvm/
setenv rvm_ruby_string "ruby-1.8.7-p334"
setenv rvm_selfcontained "0"
set-alias rvm rvm
puts stdout {rvm_path=/packages/rvm/rvm rvm_prefix=/packages/rvm/ rvm_ruby_string="ruby-1.8.7-p334" rvm_selfcontained="0" source /packages/rvm/lib/rvm ; }
module load gsl/1.12
Tags:
proc ModulesHelp { } {
puts stderr "GNU Scientific Library version 1.12"
puts stderr "TAGS: scientific libraries, numerical libraries"
}
module-whatis "GNU Scientific Library version 1.12"
prepend-path PATH /packages/gsl/bin
prepend-path LD_LIBRARY_PATH /packages/gsl/lib
prepend-path LIBDIR /packages/gsl/lib
module load netcdf/3.6.3-gnu
Tags:
proc ModulesHelp { } {
puts stderr "Network Common Data Form version 3.6.3 for gnu compilers"
puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
}
module-whatis "Network Common Data Form version 3.6.3 for gnu compilers"
prepend-path PATH /packages/netcdf-3.6.3-gnu/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-3.6.3-gnu/lib
prepend-path NETCDF /packages/netcdf-3.6.3-gnu
prepend-path INCLUDE /packages/netcdf-3.6.3-gnu/include
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"
module load netcdf/3.6.3-pgi
Tags:
proc ModulesHelp { } {
puts stderr "Network Common Data Form version 3.6.3 for pgi compilers"
puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
}
module-whatis "Network Common Data Form version 3.6.3 for pgi compilers"
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/netcdf-3.6.3/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-3.6.3/lib
prepend-path NETCDF /packages/netcdf-3.6.3
module load netcdf/4.0.1-gnu
Tags:
proc ModulesHelp { } {
puts stderr "Network Common Data Form version 4.0.1 for gnu compilers"
puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
}
module-whatis "Network Common Data Form version 4.0.1 for gnu compilers"
prepend-path PATH /packages/netcdf-4.0.1-gnu/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-4.0.1-gnu/lib
prepend-path NETCDF /packages/netcdf-4.0.1-gnu
prepend-path INCLUDE /packages/netcdf-4.0.1-gnu/include
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"
module load netcdf/4.0.1-intel
URL: http://www.unidata.ucar.edu/software/netcdf/
Tags:
proc ModulesHelp { } {
puts stderr "Network Common Data Form version 4.0.1 for intel compilers"
puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
puts stderr "url: http://www.unidata.ucar.edu/software/netcdf/"
}
module-whatis "Network Common Data Form version 4.0.1 for intel compilers"
module load intel/11.1
prereq intel/11.1
prepend-path PATH /packages/netcdf-4.0.1/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-4.0.1/lib
prepend-path NETCDF /packages/netcdf-4.0.1
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"
module load netcdf/4.0.1-pgi
URL: http://www.unidata.ucar.edu/software/netcdf/
Tags:
proc ModulesHelp { } {
puts stderr "Network Common Data Form version 4.0.1 for pgi compiler"
puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
puts stderr "url: http://www.unidata.ucar.edu/software/netcdf/"
}
module-whatis "Network Common Data Form version 4.0.1 for pgi compiler"
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/netcdf-4.0.1-pgi/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-4.0.1-pgi/lib
prepend-path NETCDF /packages/netcdf-4.0.1-pgi
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"
module load scipy/0.10.0-r7012
Tags:
proc ModulesHelp { } {
puts stderr "scipy-0.10.0 svn revision 7012 built with numpy-1.5.1"
puts stderr "TAGS: scientific libraries, python"
}
module-whatis "scipy-0.10.0 svn revision 7012 built with numpy-1.5.1"
module load numpy/1.5.1
prereq numpy/1.5.1
prepend-path LD_LIBRARY_PATH /packages/scipy-0.10.0.dev7012/lib
prepend-path PYTHONPATH /packages/scipy-0.10.0.dev7012/lib/python
module load scipy/0.7.1
Tags:
proc ModulesHelp { } {
puts stderr "scipy-0.7.1"
puts stderr "TAGS: scientific libraries, python"
}
module-whatis "scipy-0.7.1"
module load intel/10.1
prereq intel/10.1
prepend-path PATH /packages/scipy-0.7.1/bin
prepend-path LD_LIBRARY_PATH /packages/scipy-0.7.1/lib64
prepend-path PYTHONPATH /packages/scipy-0.7.1/lib64/python2.4/site-packages
module load scilab/5.3.3
Tags:
proc ModulesHelp { } {
puts stderr "Scilab 5.3.3"
puts stderr "TAGS: scilab"
}
module-whatis "Scilab 5.3.3"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/scilab/scilab-5.3.3/bin
prepend-path LD_LIBRARY_PATH :/packages/scilab/scilab-5.3.3/lib
module load bfast/0.5.2
URL: http://bfast.sourceforge.net/
Tags:
proc ModulesHelp { } {
puts stderr "bfast-0.5.2"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://bfast.sourceforge.net/"
}
module-whatis "bfast-0.5.2"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/bfast-0.5.2/bin
prepend-path MANPATH /packages/bfast-0.5.2/man
module load bfast/0.6.0d
URL: http://bfast.sourceforge.net/
Tags:
proc ModulesHelp { } {
puts stderr "bfast-0.6.0d"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://bfast.sourceforge.net/"
}
module-whatis "bfast-0.6.0d"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/bfast-0.6.0d/bin
module load bfast/0.6.1a
URL: http://bfast.sourceforge.net/
Tags:
proc ModulesHelp { } {
puts stderr "bfast-0.6.1a"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://bfast.sourceforge.net/"
}
module-whatis "bfast-0.6.1a"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/bfast-0.6.1a/bin
module load bfast/0.6.4a
URL: http://bfast.sourceforge.net/
Tags:
proc ModulesHelp { } {
puts stderr "bfast-0.6.4a"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://bfast.sourceforge.net/"
}
module-whatis "bfast-0.6.4a"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/bfast-0.6.4a/bin
module load bfast/0.6.4b
URL: http://bfast.sourceforge.net/
Tags:
proc ModulesHelp { } {
puts stderr "bfast-0.6.4b"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://bfast.sourceforge.net/"
}
module-whatis "bfast-0.6.4b"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/bfast-0.6.4b/bin
module load bfast/0.6.4d
URL: http://bfast.sourceforge.net/
Tags:
proc ModulesHelp { } {
puts stderr "bfast-0.6.4d"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://bfast.sourceforge.net/"
}
module-whatis "bfast-0.6.4d"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/bfast-0.6.4d/bin
module load bfast/0.6.4e
URL: http://bfast.sourceforge.net/
Tags:
proc ModulesHelp { } {
puts stderr "bfast-0.6.4e"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://bfast.sourceforge.net/"
}
module-whatis "bfast-0.6.4e"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/bfast-0.6.4e/bin
module load bfast/0.7.0a
URL: http://bfast.sourceforge.net/
Tags:
proc ModulesHelp { } {
puts stderr "bfast-0.7.0a"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://bfast.sourceforge.net/"
}
module-whatis "bfast-0.7.0a"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/bfast-0.7.0a/bin
module load bfast/0.6.4e-bwa
URL: http://bfast.sourceforge.net/
Tags:
proc ModulesHelp { } {
puts stderr "bfast-0.6.4e with bwa"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://bfast.sourceforge.net/"
}
module-whatis "bfast-bwa-0.6.4e"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/bfast+bwa-0.6.4e/bin
module load bioscope/1.2
URL: https://products.appliedbiosystems.com/ab/en/US/adirect/ab?cmd=catNavigate2&catID=606802
Tags:
proc ModulesHelp { } {
puts stderr "bioscope-1.2"
puts stderr "TAGS: sequencing"
puts stderr "URL: https://products.appliedbiosystems.com/ab/en/US/adirect/ab?cmd=catNavigate2&catID=606802"
}
module-whatis "bioscope-1.2"
source $env(MODULEPATH)/.gui_warning
prepend-path BIOSCOPEROOT /packages/bioscope-1.2/bioscope
prepend-path PERL5LIB /packages/bioscope-1.2/bioscope/lib/perl
prepend-path PATH /packages/bioscope-1.2/bioscope/bin
setenv JAVA_HOME /packages/java/latest
prepend-path PATH /packages/java/latest/bin
module load blat/34
Tags:
proc ModulesHelp { } {
puts stderr "blat-34"
puts stderr "TAGS: sequencing"
}
module-whatis "blat-34"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/blat-34
module load breakdancer/1.1_2011_02_21
Tags:
proc ModulesHelp { } {
puts stderr "BreakDancer-1.1_2011_02_21 : Provides genome-wide detection of structural variants from next generation paired-end sequencing reads."
puts stderr "TAGS: sequencing"
}
module-whatis "BreakDancer-1.1_2011_02_21 : Provides genome-wide detection of structural variants from next generation paired-end sequencing reads."
source $env(MODULEPATH)/.gui_warning
module load breakdancer_samtools/0.1.6
prereq breakdancer_samtools/0.1.6
prepend-path PATH /packages/breakdancer/breakdancer-1.1_2011_02_21/bin
prepend-path PERL5LIB /packages/breakdancer/breakdancer-1.1_2011_02_21/lib/perl5
module load cufflinks/0.8.3
URL: http://cufflinks.cbcb.umd.edu/
Tags:
proc ModulesHelp { } {
puts stderr "cufflinks-0.8.3"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}
module-whatis "cufflinks-0.8.3"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/cufflinks-0.8.3
module load cufflinks/0.9.0
URL: http://cufflinks.cbcb.umd.edu/
Tags:
proc ModulesHelp { } {
puts stderr "cufflinks-0.9.0"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}
module-whatis "cufflinks-0.9.0"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/cufflinks-0.9.0
module load cufflinks/0.9.1
URL: http://cufflinks.cbcb.umd.edu/
Tags:
proc ModulesHelp { } {
puts stderr "cufflinks-0.9.1"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}
module-whatis "cufflinks-0.9.1"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/cufflinks-0.9.1
module load cufflinks/0.9.2
URL: http://cufflinks.cbcb.umd.edu/
Tags:
proc ModulesHelp { } {
puts stderr "cufflinks-0.9.2"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}
module-whatis "cufflinks-0.9.2"
source $env(MODULEPATH)/.gui_warning
module load boost/1.43.0
prepend-path PATH /packages/cufflinks-0.9.2/bin
module load cufflinks/0.9.3
URL: http://cufflinks.cbcb.umd.edu/
Tags:
proc ModulesHelp { } {
puts stderr "cufflinks-0.9.3"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}
module-whatis "cufflinks-0.9.3"
source $env(MODULEPATH)/.gui_warning
module load boost/1.43.0
prepend-path PATH /packages/cufflinks-0.9.3/bin
module load cufflinks/1.0.1
URL: http://cufflinks.cbcb.umd.edu/
Tags:
proc ModulesHelp { } {
puts stderr "cufflinks-1.0.1"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}
module-whatis "cufflinks-1.0.1"
source $env(MODULEPATH)/.gui_warning
module load boost/1.43.0
module load samtools/0.1.14
prepend-path PATH /packages/cufflinks/cufflinks-1.0.1/bin
module load cufflinks/1.0.2
URL: http://cufflinks.cbcb.umd.edu/
Tags:
proc ModulesHelp { } {
puts stderr "cufflinks-1.0.2"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}
module-whatis "cufflinks-1.0.2"
source $env(MODULEPATH)/.gui_warning
module load boost/1.43.0
module load samtools/0.1.14
prepend-path PATH /packages/cufflinks/cufflinks-1.0.2/bin
module load cufflinks/1.0.3
URL: http://cufflinks.cbcb.umd.edu/
Tags:
proc ModulesHelp { } {
puts stderr "cufflinks-1.0.3"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}
module-whatis "cufflinks-1.0.3"
source $env(MODULEPATH)/.gui_warning
module load boost/1.43.0
module load samtools/0.1.14
prepend-path PATH /packages/cufflinks/cufflinks-1.0.3/bin
module load cufflinks/1.3.0
URL: http://cufflinks.cbcb.umd.edu/
Tags:
proc ModulesHelp { } {
puts stderr "cufflinks-1.3.0"
puts stderr "TAGS: sequencing"
puts stderr "URL: http://cufflinks.cbcb.umd.edu/"
}
module-whatis "cufflinks-1.3.0"
source $env(MODULEPATH)/.gui_warning
module load boost/1.43.0
module load samtools/0.1.14
prepend-path PATH /packages/cufflinks-1.3.0
module load dnaa/0.1.2
Tags:
proc ModulesHelp { } {
puts stderr "dnaa-0.1.2 : DNAA is an analysis package for short-read next generation sequencing."
puts stderr "TAGS: sequencing"
}
module-whatis "dnaa-0.1.2 : DNAA is an analysis package for short-read next generation sequencing."
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/dnaa/dnaa-0.1.2/bin
module load fastqc/0.9.1
Tags:
proc ModulesHelp { } {
puts stderr "FastQC 0.9.1 : Java based quality control application for high throughput sequence data"
puts stderr "TAGS: sequencing"
}
module-whatis "FastQC 0.9.1 : Java based quality control application for high throughput sequence data"
source $env(MODULEPATH)/.gui_warning
module load java
prereq java
prepend-path PATH /packages/fastqc/fastqc_v0.9.1/FastQC
module load mummer/3.20
URL: http://mummer.sourceforge.net/
Tags:
proc ModulesHelp { } {
puts stderr "MUMmer-3.20"
puts stderr "TAGS: bioinformatics, sequencing"
puts stderr "url: http://mummer.sourceforge.net/"
}
module-whatis "MUMmer-3.20"
prepend-path PATH /packages/MUMmer-320
module load mummer/3.21
URL: http://mummer.sourceforge.net/
Tags:
proc ModulesHelp { } {
puts stderr "MUMmer-3.21"
puts stderr "TAGS: bioinformatics, sequencing"
puts stderr "url: http://mummer.sourceforge.net/"
}
module-whatis "MUMmer-3.21"
prepend-path PATH /packages/MUMmer-3.21:/packages/MUMmer-3.21/scripts:/packages/MUMmer-3.21/aux_bin
module load mummer/3.22
URL: http://mummer.sourceforge.net/
Tags:
proc ModulesHelp { } {
puts stderr "MUMmer-3.22"
puts stderr "TAGS: bioinformatics, sequencing"
puts stderr "url: http://mummer.sourceforge.net/"
}
module-whatis "MUMmer-3.22"
prepend-path PATH /packages/MUMmer-3.22:/packages/MUMmer-3.22/scripts:/packages/MUMmer-3.22/aux_bin
module load somaticcall/36892
Tags:
proc ModulesHelp { } {
puts stderr "SomaticCall-36892 - Finds single base differences between matched tumor and normal cell sequences"
puts stderr "TAGS: sequencing"
}
module-whatis "SomaticCall-36892 - Finds single base differences between matched tumor and normal cell sequences"
source $env(MODULEPATH)/.gui_warning
module load samtools/0.1.14
prereq samtools/0.1.14
module load boost/1.43.0
prereq boost/1.43.0
module load gmp/5.0.1
prereq gmp/5.0.1
prepend-path PATH /packages/SomaticCall/SomaticCall-36892/bin
module load ea-utils/1.0.5-171
Tags:
proc ModulesHelp { } {
puts stderr "ea-utils-1.0.5-171"
puts stderr "TAGS: sequencing output"
}
module-whatis "ea-utils-1.0.5-171 (http://code.google.com/p/ea-utils/)"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/ea-utils/ea-utils-1.0.5-171/bin
module load gaussian/03e.01
Tags:
proc ModulesHelp { } {
puts stderr "Gaussian 03a.01"
puts stderr "TAGS: quantum, solid state"
}
module-whatis "Gaussian 03a.01"
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/gaussian-03e.01/g03/bsd:/packages/gaussian-03e.01/g03/private:/packages/gaussian-03e.01/g03
prepend-path LD_LIBRARY_PATH /packages/gaussian-03e.01/g03/bsd:/packages/gaussian-03e.01/g03/private:/packages/gaussian-03e.01/g03
setenv F_ERROPT1 "271,271,2,1,2,2,2,2"
setenv G03BASIS /packages/gaussian-03e.01/g03/basis
setenv g03root /packages/gaussian-03e.01
setenv GAUSS_ARCHDIR /packages/gaussian-03e.01/g03/arch
setenv GAUSS_EXEDIR /packages/gaussian-03e.01/g03/bsd:/packages/gaussian-03e.01/g03/private:/packages/gaussian-03e.01/g03
setenv GAUSS_LEXEDIR /packages/gaussian-03e.01/g03/linda-exe
setenv GMAIN /packages/gaussian-03e.01/g03/bsd:/packages/gaussian-03e.01/g03/private:/packages/gaussian-03e.01/g03
setenv gr /packages/gaussian-03e.01
setenv KMP_DUPLICATE_LIB_OK "TRUE"
setenv MP_STACK_OVERFLOW "OFF"
setenv TRAP_FPE "OVERFL=ABORT;DIVZERO=ABORT;INT_OVERFL=ABORT"
if { [info exists env(PBS_O_WORKDIR) ] } {
setenv GAUSS_SCRDIR $env(PBS_O_WORKDIR)
} else {
setenv GAUSS_SCRDIR ""
}
module load gaussian/g09
Tags:
proc ModulesHelp { } {
puts stderr "Gaussian g09"
puts stderr "TAGS: quantum, solid state"
}
module-whatis "Gaussian g09"
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/gaussian/g09/bsd:/packages/gaussian/g09/private:/packages/gaussian/g09
prepend-path LD_LIBRARY_PATH /packages/gaussian/g09/bsd:/packages/gaussian/g09/private:/packages/gaussian/g09
setenv F_ERROPT1 "271,271,2,1,2,2,2,2"
setenv G09BASIS /packages/gaussian/g09/basis
setenv g09root /packages/gaussian/g09
setenv GAUSS_ARCHDIR /packages/gaussian/g09/arch
setenv GAUSS_EXEDIR /packages/gaussian/g09/bsd:/packages/gaussian/g09/private:/packages/gaussian/g09
setenv GAUSS_LEXEDIR /packages/gaussian/g09/linda-exe
setenv GMAIN /packages/gaussian/g09/bsd:/packages/gaussian/g09/private:/packages/gaussian/g09
setenv gr /packages/gaussian/g09
setenv KMP_DUPLICATE_LIB_OK "TRUE"
setenv MP_STACK_OVERFLOW "OFF"
setenv TRAP_FPE "OVERFL=ABORT;DIVZERO=ABORT;INT_OVERFL=ABORT"
if { [info exists env(PBS_O_WORKDIR) ] } {
setenv GAUSS_SCRDIR $env(PBS_O_WORKDIR)
} else {
setenv GAUSS_SCRDIR ""
}
module load silvaco/2007_03
Tags:
proc ModulesHelp { } {
puts stderr "Silvaco EE Software Suite"
puts stderr "TAGS: circuit simulation, spice"
}
module-whatis "Silvaco EE Software Suite"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/silvaco/bin
prepend-path SFLM_SERVERS "enlicense7.eas.asu.edu"
module load silvaco/2011
Tags:
proc ModulesHelp { } {
puts stderr "Silvaco EE Software Suite 2011"
puts stderr "TAGS: circuit simulation, spice"
}
module-whatis "Silvaco EE Software Suite 2011"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/silvaco-2011/bin
prepend-path SFLM_SERVERS "enlicense7.eas.asu.edu"
module load hspice/b-2008.09
Tags:
proc ModulesHelp { } {
puts stderr "Synopsys HSPICE B-2008.09"
puts stderr "TAGS: circuit simulation, spice"
}
module-whatis "Synopsys HSPICE B-2008.09"
prepend-path PATH /packages/synopsys/hspice-B-2008.09/hspice/linux
prepend-path SNPSLMD_LICENSE_FILE "27000@enlicense6.eas.asu.edu"
module load hspice/c-2009.09-sp1
Tags:
proc ModulesHelp { } {
puts stderr "Synopsys HSPICE C-2009.09-SP1"
puts stderr "TAGS: circuit simulation, spice"
}
module-whatis "Synopsys HSPICE C-2009.09-SP1"
prepend-path PATH /packages/synopsys/C-2009.09-SP1/hspice/bin
prepend-path HSPICE_64 "1"
prepend-path SNPSLMD_LICENSE_FILE "27000@enlicense6.eas.asu.edu"
module load hspice/x-2005.09-sp1
Tags:
proc ModulesHelp { } {
puts stderr "Synopsys HSPICE X-2005.09-SP1"
puts stderr "TAGS: circuit simulation, spice"
}
module-whatis "Synopsys HSPICE X-2005.09-SP1"
prepend-path PATH /packages/synopsys/hspice/linux
prepend-path SNPSLMD_LICENSE_FILE "27000@enlicense6.eas.asu.edu"
module load stata/11.1
Tags:
proc ModulesHelp { } {
puts stderr "STATA-11.1 (Access Restricted)"
puts stderr "TAGS: stata"
}
module-whatis "STATA 11.1 (Access Restricted)"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/stata-11
module load stata/12
Tags:
proc ModulesHelp { } {
puts stderr "STATA-12"
puts stderr "TAGS: stata"
}
module-whatis "STATA 12"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/stata-12
module load r/2.11.1
Tags:
proc ModulesHelp { } {
puts stderr "R-2.11.1"
puts stderr "TAGS: statistics"
}
module-whatis "R-2.11.1"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/R-2.11.1/bin
prepend-path LD_LIBRARY_PATH /packages/R-2.11.1/lib64/R/lib
prepend-path MANPATH /packages/R-2.11.1/share/man
module load r/2.13.0
Tags:
proc ModulesHelp { } {
puts stderr "R-2.13.0"
puts stderr "TAGS: statistics"
}
module-whatis "R-2.13.0"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/R/R-2.13.0/bin
prepend-path LD_LIBRARY_PATH /packages/R/R-2.13.0/lib64/R/lib
prepend-path MANPATH /packages/R/R-2.13.0/share/man
module load r/2.4.1
Tags:
proc ModulesHelp { } {
puts stderr "R-2.4.1"
puts stderr "TAGS: statistics"
}
module-whatis "R-2.4.1"
prepend-path PATH /packages/R-2.4.1/bin
prepend-path LD_LIBRARY_PATH /packages/R-2.4.1/lib64/R/lib
prepend-path MANPATH /packages/R-2.4.1/man
module load r/2.7.2
Tags:
proc ModulesHelp { } {
puts stderr "R-2.7.2"
puts stderr "TAGS: statistics"
}
module-whatis "R-2.7.2"
prepend-path PATH /packages/R-2.7.2/bin
prepend-path LD_LIBRARY_PATH /packages/R-2.7.2/lib64/R/lib
prepend-path MANPATH /packages/R-2.7.2/share/man
module load netcdf/3.6.3-gnu
Tags:
proc ModulesHelp { } {
puts stderr "Network Common Data Form version 3.6.3 for gnu compilers"
puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
}
module-whatis "Network Common Data Form version 3.6.3 for gnu compilers"
prepend-path PATH /packages/netcdf-3.6.3-gnu/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-3.6.3-gnu/lib
prepend-path NETCDF /packages/netcdf-3.6.3-gnu
prepend-path INCLUDE /packages/netcdf-3.6.3-gnu/include
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"
module load netcdf/3.6.3-pgi
Tags:
proc ModulesHelp { } {
puts stderr "Network Common Data Form version 3.6.3 for pgi compilers"
puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
}
module-whatis "Network Common Data Form version 3.6.3 for pgi compilers"
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/netcdf-3.6.3/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-3.6.3/lib
prepend-path NETCDF /packages/netcdf-3.6.3
module load netcdf/4.0.1-gnu
Tags:
proc ModulesHelp { } {
puts stderr "Network Common Data Form version 4.0.1 for gnu compilers"
puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
}
module-whatis "Network Common Data Form version 4.0.1 for gnu compilers"
prepend-path PATH /packages/netcdf-4.0.1-gnu/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-4.0.1-gnu/lib
prepend-path NETCDF /packages/netcdf-4.0.1-gnu
prepend-path INCLUDE /packages/netcdf-4.0.1-gnu/include
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"
module load netcdf/4.0.1-intel
URL: http://www.unidata.ucar.edu/software/netcdf/
Tags:
proc ModulesHelp { } {
puts stderr "Network Common Data Form version 4.0.1 for intel compilers"
puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
puts stderr "url: http://www.unidata.ucar.edu/software/netcdf/"
}
module-whatis "Network Common Data Form version 4.0.1 for intel compilers"
module load intel/11.1
prereq intel/11.1
prepend-path PATH /packages/netcdf-4.0.1/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-4.0.1/lib
prepend-path NETCDF /packages/netcdf-4.0.1
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"
module load netcdf/4.0.1-pgi
URL: http://www.unidata.ucar.edu/software/netcdf/
Tags:
proc ModulesHelp { } {
puts stderr "Network Common Data Form version 4.0.1 for pgi compiler"
puts stderr "TAGS: storage libraries, scientific libraries, netcdf"
puts stderr "url: http://www.unidata.ucar.edu/software/netcdf/"
}
module-whatis "Network Common Data Form version 4.0.1 for pgi compiler"
module load pgi/7.0
prereq pgi/7.0
prepend-path PATH /packages/netcdf-4.0.1-pgi/bin
prepend-path LD_LIBRARY_PATH /packages/netcdf-4.0.1-pgi/lib
prepend-path NETCDF /packages/netcdf-4.0.1-pgi
prepend-path WRFIO_NCD_LARGE_FILE_SUPPORT "1"
module load git/1.7.2.3
Tags:
proc ModulesHelp { } {
puts stderr "git-1.7.2.3"
puts stderr "TAGS: version control"
}
module-whatis "git-1.7.2.3"
prepend-path PATH /packages/git/bin
prepend-path MANPATH /packages/git/share/man
module load maya/2008
Tags:
proc ModulesHelp { } {
puts stderr "Autodesk Maya 2008"
puts stderr "TAGS: visualization"
}
module-whatis "Autodesk Maya 2008"
source $env(MODULEPATH)/.gui_warning
prepend-path PATH /packages/maya2008/maya2008-x64/bin
prepend-path SGIAWD_LICENSE_FILE /packages/maya2008/aw.dat
module load ncview/1.93g
URL: http://meteora.ucsd.edu/~pierce/ncview_home_page.html
Tags:
proc ModulesHelp { } {
puts stderr "ncview-1.93g"
puts stderr "TAGS: netcdf, visualization"
puts stderr "url: http://meteora.ucsd.edu/~pierce/ncview_home_page.html"
}
module-whatis "ncview-1.93g"
prepend-path PATH /packages/ncview-1.93g/bin
prepend-path MANPATH /packages/ncview-1.93g/man
module load paraview/3.4.0
Tags:
proc ModulesHelp { } {
puts stderr "paraview-3.4.0"
puts stderr "TAGS: visualization"
}
module-whatis "paraview-3.4.0"
prepend-path PATH /packages/paraview-3.4.0/gcc/bin
module load pathway-tools/14.0
URL: http://bioinformatics.ai.sri.com/ptools/
Tags:
proc ModulesHelp { } {
puts stderr "pathway-tools-14.0"
puts stderr "TAGS: bioinformatics, visualization"
puts stderr "url: http://bioinformatics.ai.sri.com/ptools/"
}
module-whatis "pathway-tools-14.0"
prepend-path PATH /packages/pathway-tools-14.0
module load vmd/1.8.7
Tags:
proc ModulesHelp { } {
puts stderr "vmd-1.8.7"
puts stderr "TAGS: molecular dynamics, visualization"
}
module-whatis "vmd-1.8.7"
prepend-path PATH /packages/vmd-1.8.7/bin
prepend-path LD_LIBRARY_PATH /packages/vmd-1.8.7/lib
module load vtk/5.6.1
Tags:
proc ModulesHelp { } {
puts stderr "vtk-5.6.1"
puts stderr "TAGS: visualization"
}
module-whatis "vtk-5.6.1"
prepend-path PATH /packages/vtk-5.6.1/bin
prepend-path LD_LIBRARY_PATH /packages/vtk/5.6.1/lib/vtk-5.6